Pseudomonas fluorescens F113, PSF113_2411 (clpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGTACTGGCCTGCACCGCACTGTACGCCGATGGCCGGCGCTCCCTGGACGGGTTCGCGGCGATTGTCCGGGAACAGTTCGGGCTGCCCGTGGAGCTG AACGCCTACGAAGGTGGCTGGCGTGAAATCCCGCCGGCCAGCCGCAGCCGCTTGCAACCGGGCGGGCGCAACCTGCGCCTGGGCCGCAACGCGGTGGCCG GTACACACGTCTGGGACGAACATGCTGGCGTGCGCCTGACCCTCGGGCCGCTGACCACGGGCCAGGCCAGCGAACTGCTGCCCAACGGCGAAACCCATCC GCTGCTCGCCAGTCTCTACGCCCTGTACTTCGGCCCCGATCTGGATTGCACCCTGGTACTGCTGATCCGTGGTGCCGGCCCACTGCAACTGGACCGCCAG GCAGCGCCACGGCTGAACTGGAACGGTGGCCTGCAACGCCAGCCAACCCTCGCCGTGCAACGGATCGAAACCCGTCTTCGCCAGCCGGAGATTGCCTGAA
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| DNA Sequence for Gene |
>PSF113_2411
|clpB
ATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTGGAACGGGCCGCGCAACGCTGCATGCAGCGCAGCCATCACTATGTGG AAATCGAACATCTGCTGTTGGAATTGCTCGACATCGAGGGCGGCGACTTTGCCTGCCTGCTGCCGCGCTTCGGGCTGGAGCGTGACGCGGTGGCGACGGA AACCAACAAGGCCCTGGACCTGTTCAAATCCGGCAGCACCCGCACGCCCGCCTTGTCGGCACAAACCATCGGCCTGTTGGAAGACGCCGTGGTCCAGGCC AGTGTGCTGGGCCTGGACAGCATCCGCTCCGGGCTGTTGCTATTGGCGCTGCTGGACCGTGATGAGCGCCGCAGCCTGCTGCTCAACAGTGCCTCGTCGT TGCTGCGCATTCCCCGCGACGCCCTGCGCGCCCACCTATTGGAGTGGACCGAAAGCTCCCGTGAACATGTCGGTGGCGTGCGCCCGACCAAACCCGGCGA GCCACCCCAGAAACAAGACCCGGTGCTGGACCAGTACACCCAGGACCTGACAGCCGACGCCCGGGCCGGGCGCATCGACCCCATCGTTGGCCGCGACGGC GAGATCCGCCAGTGCATCGACATCCTGCTCCGGCGCCGGCAGAACAACCCGATCCTGGTCGGCGCACCGGGCGTCGGCAAGACTGCGGTGGTGGAAGGCC TGGCCCTGCGTATCGCCGCCGGGGATGTGCCGCCGTCGTTGCAGGAAGTCACCCTGCGTGTCCTCGACCTGGGCCTGTTGCAGGCCGGTGCCGGCGTCAA AGGTGAATTCGAACAGCGCCTCAAGGGTGTGATCGACGCGGTACGCAGTGCCGAAAAGCCGATCATCCTGTTCATCGACGAAGCCCATACGCTGATCGGC GCCGGCGGTGCGGAAGGCGGCAGCGATGCGGCCAACCTGCTCAAGCCCGCCCTGGCCCGGGGCGAACTGCGCACCCTGGCCGCAACCACCTGGCTGGAAT ACAAAAAATATTTCGAGAAAGACCCGGCCCTGGCCCGCCGCTTCCAACTGGTACAGGTCGAAGAACCGGACGAACTCACCGCCGTGGAAATGCTCCGGGG CGTGGCCAGCAAACTGGAACAGCACCACGGCGTGCAGGTGCTGGACGCGGCCATCCACGAGGCAGTGAAGCTGTCCCACCGCTACATCTCCGGGCGACAG TTGCCGGACAAGGCCATCAGCGTGCTCGACACCGCCTGCGCCCGGGTCGCCCTCGGCCAGCACGACGTACCGCCGCCGCTGGAAAGCCTGCGCCATCGGC AGAACAGCCTCAAGGACGAGGTCGAACGCCTGCGCCGGGAACAGGCGACCGGGCTCGATCACCGCGAGCGCATAACCCTGCTCGAAGGCGAATCGACCAG CAACGTGCAAGCCATCCGCGAACTGGAAACCCGCTGGGGCGAAGAGCGCGAAGCCGTGCGCGAACTGCTCGACACCCGGCGCGAACTGCTTGCCCTGAGC GAACGCGCCGACAGTGAAAAAGCCGACACCGAGATCGATAACCGCATCGACCACCTGGCCGCCGAACTGCTGCGCCTGGAGGCGGGCCTGGATGCCATTC GCCAGGACGATCCGCTGGTGCCCGAACAAGTGGACAGCAAGACCGTCGCCGCCGTGATTGCCGGCTGGACCGGCATTCCGGTCGGCAAGATGCTCGCCGA CGAAGCCCACGCCGTGCGCACCCTCGGCCAGCGCATGGGCCAGCGGGTCATGGGCCAGAGCACCGCGCTGAACACCATCGCCCAACGCCTGCAAGCCTAC CGCGCCGGCCTCACCGACCCACAGAAACCGGTTGGCGTGTTCCTGCTGGTGGGCCCCACCGGCGTGGGAAAGACCGAAACCGCCTACGCCCTGGCCGACG CCTTGTACGGCGGTGAGCGCAACCTGATCAGCATCAACCTCTCGGAGTACCAGGAAGCCCACACCGTCAGCCAACTCAAAGGCGCCCCACCCGGCTACGT CGGCTACGGCAGCGGCGGTGTGCTCACCGAAGCGGTACGGCGCAAACCCTATTCGGTGGTGCTGCTGGATGAAATCGAAAAGGCCCACCCGGATGTGCTT GAAGCCTTCTACAACGTCTTCGACAAAGGCCTGATGGAAGACGGCACCGGCCTGGTGGTGGACTTCAAGAACACCGTGATGCTCGCCACCAGCAACGTCG GTGCCGAACTGTTGCTGGACACGCCGACCGCGCAACTGGGCAGCGACGCCTTCAACGAAGCCTTGCACAAGGTGCTGCTGCAAGCGTTCCGTCCGGCATT TTTGGCACGCATGACCGTGGTGGCGTACCGGCCGCTGGATGAAGCGACGCTGGAGGGGATTGTGCTGGCGAAGCTGGAAAAATTGCGCGGGCGCTACAAG GCCGCGACCGGCAAGCAGTTCGAGTTCGATGCGGGGATCGTCAAGGCTGTGTTGGCCAAGTGCAGCGCGGCGGGAGCACGGGACGTCGAGAATGTGCTGA TGACCCAAGTGACGGGGAAGTTGGCGGAGTGGGTGTTGGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTTGCCCCGAGCTTCTGGCGTACCGTTCGCCCTCGTCTTTGCACGTCAAGCCCGCCATGGGCTACGGGCGGTGAAGTGGCGTTTTTCACCGTGTATTTAC TCATGACCAATGGAAGGACATTGCCATGCTGAAGGCAAGACTTGAACTGGAAAAGCGCCATCTTTGTCCCACCTTCGCCAATACTCACGCAGGCATCGTC AGCTTCGACCTGCGCCTTGATATCGATCGAGACTTGCTGGCGTTGGCAGACGGCAACGCCCATCGTGCCTACTACCTGCCGTGGAATCCTGACGCGGGAC TCTATGTCGACCTCCCTGCGACCCCGACGGGCAACGACCCACTCCTGTTCCTCACTGCCAACCTGACAGGCTGTTGCGTGGGAATCCAGAACTTCGGCGG GTTCATCAGGGTTCGACACTACAACCTGTACACCACGGGCAATCAGAATCCGGTCTTCTCCCAGGATGACCTTTTTCGCTATGGCACCAACGTTTCCTGG
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| Amino Acid Sequence |
>chaperone ClpB
MELASLIGRLNPDNRRALERAAQRCMQRSHHYVEIEHLLLELLDIEGGDFACLLPRFGLERDAVATETNKALDLFKSGSTRTPALSAQTIGLLEDAVVQA SVLGLDSIRSGLLLLALLDRDERRSLLLNSASSLLRIPRDALRAHLLEWTESSREHVGGVRPTKPGEPPQKQDPVLDQYTQDLTADARAGRIDPIVGRDG EIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAGDVPPSLQEVTLRVLDLGLLQAGAGVKGEFEQRLKGVIDAVRSAEKPIILFIDEAHTLIG AGGAEGGSDAANLLKPALARGELRTLAATTWLEYKKYFEKDPALARRFQLVQVEEPDELTAVEMLRGVASKLEQHHGVQVLDAAIHEAVKLSHRYISGRQ LPDKAISVLDTACARVALGQHDVPPPLESLRHRQNSLKDEVERLRREQATGLDHRERITLLEGESTSNVQAIRELETRWGEEREAVRELLDTRRELLALS ERADSEKADTEIDNRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDSKTVAAVIAGWTGIPVGKMLADEAHAVRTLGQRMGQRVMGQSTALNTIAQRLQAY RAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERNLISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVL EAFYNVFDKGLMEDGTGLVVDFKNTVMLATSNVGAELLLDTPTAQLGSDAFNEALHKVLLQAFRPAFLARMTVVAYRPLDEATLEGIVLAKLEKLRGRYK AATGKQFEFDAGIVKAVLAKCSAAGARDVENVLMTQVTGKLAEWVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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