Pseudomonas fluorescens F113, PSF113_2379
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGACGTGGAAGTGTTCGTCAACTGCCAGTACGGCTACGACATCCAGTGCGAAGTGGTGGGGGAGACCGGCATCGCCAAGCTCCCGGAACCGTCCCAGG TGCAATTGCGCAGTGGCGCGAAACTGTCGAATGCGATCCTGATGGACTGGAAGGACCGTTTCATCGCGGCCTACGACGTCGAATTGCAGGCCTTCATCGA CGGCGTGCGCGCCGGGCAGGTGGGCGGGCCGTCGGCCTGGGACGGCTTCGCCGCAGCGGTGGCGGCGGATGCCTGTGTGGCAGCGCAGCAGAGTGGGCAG ATCGTCAAGGTCGAACTGCCCGAGCGCCCGCGTTTCTACGGCTAACCACATTCCCCTGTGGGTATGCAGTCAAATTGTGGGAGCGAGCTTGCTCGCGATA GCGGTGGGTCAGTCAACATAATCCAGGCTGATCCGACGCCATCGCGAGCAAGCTCGCTCCCACAAGGGGACGTTTATCCAATGACTTTCAAGGAGCTTTC
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| DNA Sequence for Gene |
>PSF113_2379
ATGCGAATCGGACTAGTCGGCTACGGCAAGGGCGGGCGGTTCTTTCACGCGCCGCTGATCAGCATTCTGCCCGGGGCTACGTTCGTCGGCGTGGTGACCC GGTCCGCCGAGCGGCGCCAGCAACTGGCGAGTGATTATCCGCACGTTCAAGCTTTTGACTTCCTCGAACAATTGGTCGCAGCGGGCGTCGATGCGGTGGT GGTGTCCACGCCTTTGGAGGGGCGCCCGGCCATTGTGCTGCAAGCCATCGAACTCGGCGTGGCGGTGGTCAGCGACAAACCGTTCGCCCCTGACGCCGCC CAGGCCGAGGCGATGGTGCTGGCCGCCGAACGCCGCAACGTGCCACTGAGCGTGTACCAGAACCGTCGCTGGGATTCGGATTTCCTGACCCTGCGCAAGC TGCTGGCCTCCGGCGCCCTGGGACAGGTCATTCGTTTTGAATCCAGCGTCGAGCGCTATTCGCCGACCTCGGTCGGCAAAGGCAGCGGTGGCGGGTTCCT GCGCGACTTGGGCAGCCACCTGGTAGACCAGGCGCTGCAACTGTTCGGGCCGGTGGTGCGGGTCTACGCCGAGCTGGACTACCGGCAGCCCGACCAGGTG TTCGACAACGGCTTCTTCATGTCCTTGACCCATGCCAGCGGCGTGATTTCCCACTTGAGCGGCAATTGCGTGCAAAACGCAGCGCGCCCGCGCTTTCGGG TCAACGGCACCCAGGGCTGCTATACCGTCGAAGGCCTGGACGGGCAAGAAGCCCAGGCACTGGCGGGCTTGAGCCCGGCGACCGAGGGCGAACGCTGGGG GGCTGAAGAGCATCGGCGCTGGGGTTGGTTCGAACATGGCACCGAGCGCGAGCGGGTGACCTCGGAGCGTGGTTGCTGGCTGGCGTTCTACCAGCACCTG CAAACCGCGTTGCAGGGGGCTGGTTCGTTGCCGGTGGAGGCCCGTGATGCACTGGCGACCACACGTATCCTCGACGCTGCCCGACAGAGTGCCGAGCAGG GCGAAGTGGTGCTGTTGTCCACGCCTGTCGGTCATGGAATAAAAAACGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATTCTAAAATGAGTTGATATGGAAAATATTTTCCAATAAAGTCGATTCCAGGTTACCGACAATCCTGTCTGTCTCCCCGCCAAGCCAGCCTTGAACGGA TGACAGACGAAACAAAAACAAGAAACACAGCTAGGTACCGTCGATGAAAACCTTCAGCCGCTCTGCGTTTCACCTGTCACATCTGCTGCGCCTGCCTGCA GTCCTTCCCCTGTTCGAATCCCTGTGTATCCAGCGCAAGGGCGCCGTGGTCTGTTGCATGCCCGGCGCGCCCATCGTGCGCTTGCCCCGTTCCTGAGTTC CTGATCCGTCACGCCTTATCCATAAAACCAACAAAAAAGTGGAGAAAGACCGTTCATGAAGACCAAGACCCGTATCGCCTCGCTGGCCCTGTCGTTGATG CTCACCAGCGGCGCTGCCCTGGCGGACCTGAAGATCGGCGTCAGCATGTCCCAGTTCGATGACACCTGGTTGACGTACCTGCGCGAGTCCATGGACAAGA
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| Amino Acid Sequence |
>gfo idh family oxidoreductase
MRIGLVGYGKGGRFFHAPLISILPGATFVGVVTRSAERRQQLASDYPHVQAFDFLEQLVAAGVDAVVVSTPLEGRPAIVLQAIELGVAVVSDKPFAPDAA QAEAMVLAAERRNVPLSVYQNRRWDSDFLTLRKLLASGALGQVIRFESSVERYSPTSVGKGSGGGFLRDLGSHLVDQALQLFGPVVRVYAELDYRQPDQV FDNGFFMSLTHASGVISHLSGNCVQNAARPRFRVNGTQGCYTVEGLDGQEAQALAGLSPATEGERWGAEEHRRWGWFEHGTERERVTSERGCWLAFYQHL QTALQGAGSLPVEARDALATTRILDAARQSAEQGEVVLLSTPVGHGIKNE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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