Pseudomonas fluorescens F113, PSF113_1976 (hcp2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfe02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfe03070 | Bacterial secretion system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF141452 | Hcp1-like | IPR036624 | Hcp1-like superfamily | 19 | 165 | 9.55E-46 |
| PANTHER | PTHR34319 | MAJOR EXPORTED PROTEIN | - | - | 1 | 157 | 1.3E-35 |
| Pfam | PF05638 | Type VI secretion system effector, Hcp | IPR008514 | Type VI secretion system effector Hcp | 21 | 149 | 1.5E-39 |
| NCBIfam | TIGR03344 | JCVI: type VI secretion system tube protein TssD/Hcp | IPR008514 | Type VI secretion system effector Hcp | 1 | 162 | 2.2E-63 |
| Gene3D | G3DSA:2.30.110.20 | - | IPR036624 | Hcp1-like superfamily | 1 | 166 | 3.8E-61 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.