Pseudomonas fluorescens F113, PSF113_0206 (lapD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAACTGGAACAGCTCAAGGTGGTGAACCTGTTTTTCAACAAACAGGTGCGCTACGTGGAAGACATCGACCTGTGGCGCGAGGTCGACTACTGGGAGACCC CGATCCAGGCTCTGTGGAAGGGCGCTGGCGATTGTGAAGACTACGCCATCGCCAAGTATTTCAGCCTGCGTCATCTCGGGGTCTCCAGTGACAAGCTGCG CATCACCTACGTCAAGGCCTTGCGGCAGAACCGTGCGCACATGGTGCTCACCTATTACGCCACGCCCGAGGCGATGCCACTGGTACTCGACAGCCTGATC GACGGCATCCTGCCGGCCAGCCAGCGAACCGACTTGCTCCCGGTCTACTCTTTCAATGCCGAAGGGCTGTGGCTGCCGGGCGCCAAGGGCAACAAGAAAG TGGGTGACACCAAGCGCCTGTCCCGGTGGCAGGATGTGTTGAAGAAAATGCAGGCCGAAGGTTTTCCGGTCGAGACGACTAACTAGGAGCGCGCGCTCAG
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| DNA Sequence for Gene |
>PSF113_0206
|lapD
ATGTCCTTGTTCAAACAGCTGTTGATCGCTATCTGTCTGTTCCTGGTGGTTGCCTTCAGCGGCAGCTTCATGGTCAGCCTGGAGAGCTCGCGGGCCCAGT ACGTCAACCAGTTGCGCTCCCATGCCCAGGACGCGGCCACGGCGCTGGCGCTGTCGTTGACGCCGAACATCGACGACCCGGCAATGGTGGAGCTGATGGT CAGCTCGATCTTCGACAGCGGCTACTACGCGACCATCCGCGTGGTCGACGTGGCCACCGACAAGACCCTGGTCGAGCGCACCGGCACGCCGGACGCCGGC AGCGTGCCGCAATGGTTCGTCAAGCTGATCGGCCTGGAGCCGGCCGGTGGCGATGCCATCGTCAGCCGCGGCTGGGAGCAGGCGGCGCGGGTCGAGGTGG TCAGCCACCCGATGTTCGCCCTCGCCAAGCTGTGGCAGAGCGCGTTGGGCAGCCTGGGCTGGCTTTTGCTGTGTGGCGCCGTGAGCGCGGTGCTGGGGGC CTTGCTGCTGCGTCGCCAGCTCAAGCCGCTGGACTACATGGTGCATCAGTCCCATGCCATCGCCCGTCGCGAGTTCCTGAGCCTGCCGGAGCTGCCGCGC ACGCCTGAACTGCGCCGCGTGGTGCAGGCGATGAATCAGATGGTCGAGAAGCTCAAGGCGCTGTTCCAGGAACAGGCCGAGCGCAGCGAAAAACTGCGGG TCGAATCCTACCAGGACAACCTCACGGGCCTGGCCAACCGGCGCTATTTCGAAATGCAGCTCAATGCCCGGGTGAGCAACCCGGAGCAGGCCAGCTCCGG TTATCTGCTGTTGTTGCGGGTCAAGGACCTGGCCGGTTTGAACCAGCGGTTAGGGGGGCAGCGCACCGACCAGTTGCTCCAGGCGGTGGGTGAGCAATTG CTGCGTGAATGCGCGCGGTATCCGGAAACCCACAACCTGGTCACGCGTATTCGCGGCGGGGAATTCGCGGTGCTGGCGCCTGGGCTGGTGCGCGAGGAAG CGCTGCAACTGGCGCAGAATCTTGAGGCTGCATTGGCGAGCCTGCATGCGACCGGCGCGACGGATGTGGCGTCGGTGGCCTCCATCGGGCTGGCGCCATT CGTCCATGGCGACTCGCCGCAAGTGGTGCTCCAGCTCGGTGACCAGGCCTTGGCCCAGGCCGAAAGCCAGGGTGAACCGGGTTGGGCCTGCCTGGACCAC AGTGCGTCGGCCAGTGTCGGTGATGATCACCATGCCTGGCACAATTTGCTCGATCAGGCGCTGAGTCATCAGCGCTTCGAACTGTACTTCCAGCCGGTGG TGGCCGCCCAGGACACCCAGGTGGTGCTGCATTACAAAGTGCTGTCGCGGTTGCTCGACGAGCAGGGCCAGACCATCCCCGCCGGGCGGTTCCTGCCCTG GCTGGAGCGCTTTGGCTGGACCGCGCGCCTGGACCGCTTGATGCTCGAACAAGTGCTCAAGCAAATGGCCGGGCACGAGCAATCCTTGGCGTTGAACCTG TCCTCGGCGACCTTGGCCGATCCGCAGGCGTTGAACAAGATCTTTGAAATCCTGCGGGCGCATTCCAACCTTGGGTCGCGCTTGACCCTGGAGATTGGTG AAGAGCAACTGCCGGAGCAAGCGGTACTGGAGCAGTTGACCCGGCATTTGCGTGAGTTGGGCTTCTCCTTGAGCCTGCAGCGTTTTGGTGGGCGGTTCAG CATGATCGGTAACTTGTCGCGGTTGGGGTTGGCTTACCTGAAGATCGATGGCAGTTATATCCGTGCGATTGACCAGGAGAGCGATAAGCGCTTGTTCATC GAGGCGATTCAGCGGGCGGCTCACAGTATTGACCTGCCGTTGATTGCTGAGCGGGTTGAGACGGAGGGGGAGTTGGCGGTGATTCGGGAGATGGGGTTGT TTGGGGTTCAGGGGCAGTTGGTTGGGGAGCCTAAGCGTTGGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCTGGCTGTGCTCTTCTGCCCGTGTACATATCCATTGCTGCGGTAACGGCTGCTTAGGGTTCCGCCCTGACGGCGGCTCACTTTTTTTCAAACGCCAAA AAAAGTAAGCAAAAAAGGCTTGCCCCACCACTCGGTGCCTCGCTTAGGCTCGGCATGCCCGAACGAAGGCATTGCTCCGTGGGCCCGCCGCGAAGGGCCA TCCATGGCCCAGCGCGGCTATCCCGGCATCCATGCCGGGATGCCCACTCCACAATGCCTGCGTTCGGCCAGCGTGGTTAACGGGGCCTCCAGATCAAAAG CAAAAGCGAGGCGGCCTGAGAGCCGACCTGGTTCTTGGTAAGACCGCGTTCCTCCTGTGGGAGCGAGCTTGCTCGCGAAGGCGGAGGGTCAGTTTGCGGT GATGTTGGATACCCACAAGGTTTTTGGGTACTGCACGAACCTGTTGCGAGGGAGCTTGCTCCCGCTGGGTCGCGCAGCGGCCCCAAAAAAAGCGATGAGC
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| Amino Acid Sequence |
>protein LapD
MSLFKQLLIAICLFLVVAFSGSFMVSLESSRAQYVNQLRSHAQDAATALALSLTPNIDDPAMVELMVSSIFDSGYYATIRVVDVATDKTLVERTGTPDAG SVPQWFVKLIGLEPAGGDAIVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLLLCGAVSAVLGALLLRRQLKPLDYMVHQSHAIARREFLSLPELPR TPELRRVVQAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLQAVGEQL LRECARYPETHNLVTRIRGGEFAVLAPGLVREEALQLAQNLEAALASLHATGATDVASVASIGLAPFVHGDSPQVVLQLGDQALAQAESQGEPGWACLDH SASASVGDDHHAWHNLLDQALSHQRFELYFQPVVAAQDTQVVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLEQVLKQMAGHEQSLALNL SSATLADPQALNKIFEILRAHSNLGSRLTLEIGEEQLPEQAVLEQLTRHLRELGFSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFI EAIQRAAHSIDLPLIAERVETEGELAVIREMGLFGVQGQLVGEPKRWG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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