Pseudomonas fluorescens F113, PSF113_0042
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCACAGCAATGGTGTGTTGAGTCGCCTGCGGCCCTGGGCGATCGAGGACCATCCGCTGCCCGGGCCGAAGGGCCGCGGGGCGATCCTCGCGCGTTTCG GCGAAGGTCCCGAGGCGCTGGTCGTGGTCATGATGCACCTGGCGCTCGGGGCGCGTACCCGGACGATGCAGCTGGCGTACATTCGCGAGCTGATCGGCGG CTACAAGCACCAGGTGCTGATGGGCGACATGAACACCCACGCCACCGATTTGCTGCAGACTTCGCCCCTGCGCGATCTCGGCCTGCTTGCTCCCCAACTG GAAGCGACATTCCCCAGCTGGCGCCCCCAGCGCTGCCTGGACCATATTTTGTTGAGCCCGACCCTGACCCTCGAACGCGTCGAGGTGCTGGCCCAACCCA TTTCCGATCACCTGCCGGTCGCGGTAGAAATTCGTTTGCCTGGTTCGCTCACGGCCGATGCATTCCCCGCGCTGAGTCCTGCCCCTCGCGGATCCGATGA
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| DNA Sequence for Gene |
>PSF113_0042
ATGAGCGACGACGCCGAACGCTGGAGAGAGAAGTACCTCAAGAGTATCGAACAGCAGGAAAAGCTCGAGCGTCGCTGGGATGCTCGGCTCGACTTGCTGC GTCGTGGCCTGGTGCGCAGCACCCTGGCCGCCGAGGGCACTGACCGGGCTGTCGATCAATGCATGAAAGAGATGCGCGAGGTGGTGCGCACCGATGACAT GGATGCTGGCCTCGCCGCCCTGCTGCCGCGCCTGGAGAAAGCCGTACTCGATTCCGAGCAGCGTCGCGAAACCCGGGTCGAGCAGACGAGCGCCGCGTTG ACGGCCCTGGTTGCCCAGTTGCAGAGCCTGCCGCTGCCCAAAGAAGTCAGCCGGTCGCTGAAGAAGTTCGCCAAGCAACTGGAGGATCGGGCCAACCAGT CCCGGGAGATTCCACTGTTGCTCAGCGAATTGAGCGGTTTGCAAGGCAAGGCACTGAGTGCCCTGGACGCCCCTGTCGAACCGAATCGCCCCGGCCTGTT GCAACGGCTGTTCGGCGGCCAAGGCCATGAGGAAGCGACGCCCCAGCCCCACGAACCTGTCCAGGCCGGCGTGGCGCCTGCCTCAGAAACGGCCCTGCCC GTAGCGGTGGAGCCGGCAACGGACGCAGAATCTGTCGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCGCAGCCATCGG TCGCGGAGCAAGCACCAACGTTGGAGATGACGCCCGAACCGGTTGCCATGACTGCGCCGAAGATCGAGCCAGACCCGACGCCCGCTCCAACACTTGTTGC CGAAGTGGTTCAACCGATCAGCGAACCGGACGAAGCCACCGAGCCCGCGCCGCTGCAAGTCTTGGTCGCGGACGAACTCCCGGTAGCGGCACCCCCGCTC GAGAATCCCGACGAACTGATGCCCGAGGAGCCTGCACAGGCCCTGCCCGATCCCTCGCTGCCCCCAGCGGAGCCCGCCGAGCCTCTGGAAGCCATCGATG TGGCTGACGCCCAGTACGCCCTGCCCGACTCGCCGGAGCCGTCGTACAGCTCGGTCGCCAAGCATATCGAAGACACGTTGTTGGGCCTGTTGGGTGACCT GACCTTGCCCGAGCGCCATCGGCCACAAGCCGAAGCCATGCGTGAGCGGTTGCGAAATGGCTTGAACTGGTATGAATTGCTGCCGATCCTCGATGATCTG GCGGTACTGATGTTGGCCATCACCGACACCGGCCAGCATGAGTTTGAAGCGTACCTGCAGCGCCTCAACGATCGGCTTGAGTCATTCCAGAGCAGCCTGC AGGCCGCCAGTGAAGACCACGCCGACAACCTGTCGGCCTCCCGGGAAATGGACACCCAGATTCGCGAACAGGTGGACGGCCTGCAAAGCAGCGTGCAAGA AGCCGATGACCTGGAAGGCCTCAAGCAGGTGCTCGAGAATCATCTCGAAGGCTTGCTCGGCACGATGGACCAACACCGCCAGCAACGTGATCAACGCGAG CAGGAAGTCTCGGCTCGCCTGAAAAGCCTGGCCGATCGCGTCGCGCTGATGGAGCAGGACGCCCAGGTCGTGCGGGAGAACCTCGAGGAGCAGCGGCAAA AAGCGTTGGTCGATCCCCTCACCGGGCTGCCCAACCGCGCCGCCTGGTCCGAACGCCTCGAGCATGAAGTCGTTCAGTGGCAACGGCACGGCAACAGCTT GCTGCTGGCCATGCTCGATCTCGATCATTTCAAGCGCATCAATGACAACTACGGCCATCTGGCCGGTGACCGGGTGTTGAAACTGATCGCCTCGGTCCTG CGTAAACGCCTGCGTGGCGGCGATTTCATTGCGCGTTTTGGCGGCGAGGAATTCATCCTGCTGGTGCCCGATACGCCCCTGGCTGCCGGCGCCAAGCTGG CCGAAGCGCTGCGCCTGGCCATTGAAGCCTGTCCGTTCCATTTCAAGGGCGAGCCGGTGACGGTGACGGTATCCATTGGCCTGACGGCATTCAAACCGGG CGAACACAGCGATTCGGTGCTTAAAAGAGCCGATCAGGCGCTTTACCGCGCGAAAAATGCCGGGCGCAACCGCATAGAATTGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGGCTAATTGTTCCAATTTGTTTAATATCGTCGCGCGCACCGGATCATCGCGAGGCGATACGTTACACTGTTGCATTACTTCCAGCGTGTAATGCCTTC CGCCATGAAATTTTTTTCGCTCATTGTTGCTTTATTTATCCTGGCCGGCTGCACCAGTGGCCCGCGGCTCGACACCAGCCACCCTTCCGTCAACCATGAC AACCGCATCCAATTCGTGGTGGTGCATTACACCTCGGCTTCCCTGGAGCACTCACTGGCGCTGCTGACCCATGGCGAAGTCAGTGCCCATTACCTGATTG GCGATGATAAAGACGCGACCATCTATAAGCTGGTGGATGAAGGTCGACGCGCCTGGCACGCCGGGGAAAGTGAATGGGAAGGCCGGACCTGGCTCAATTC CAGTTCCATCGGCATCGAAATCGTCAATCCGGGATTTGTCGACACGCCCACCGGGCGCCTCTGGTATCCCTACAGCGAAGCCCAGGTCCAGGCTTTGACC
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| Amino Acid Sequence |
>diguanylate cyclase
MSDDAERWREKYLKSIEQQEKLERRWDARLDLLRRGLVRSTLAAEGTDRAVDQCMKEMREVVRTDDMDAGLAALLPRLEKAVLDSEQRRETRVEQTSAAL TALVAQLQSLPLPKEVSRSLKKFAKQLEDRANQSREIPLLLSELSGLQGKALSALDAPVEPNRPGLLQRLFGGQGHEEATPQPHEPVQAGVAPASETALP VAVEPATDAESVAPAPAPAPAPAPAPAPAPQPSVAEQAPTLEMTPEPVAMTAPKIEPDPTPAPTLVAEVVQPISEPDEATEPAPLQVLVADELPVAAPPL ENPDELMPEEPAQALPDPSLPPAEPAEPLEAIDVADAQYALPDSPEPSYSSVAKHIEDTLLGLLGDLTLPERHRPQAEAMRERLRNGLNWYELLPILDDL AVLMLAITDTGQHEFEAYLQRLNDRLESFQSSLQAASEDHADNLSASREMDTQIREQVDGLQSSVQEADDLEGLKQVLENHLEGLLGTMDQHRQQRDQRE QEVSARLKSLADRVALMEQDAQVVRENLEEQRQKALVDPLTGLPNRAAWSERLEHEVVQWQRHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLIASVL RKRLRGGDFIARFGGEEFILLVPDTPLAAGAKLAEALRLAIEACPFHFKGEPVTVTVSIGLTAFKPGEHSDSVLKRADQALYRAKNAGRNRIELG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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