Pseudomonas fluorescens Pf0-1, Pfl01_5596
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AATAGTCTTGTGCAGCCAAGGATTCATGACTATTAAATATATAAAATGCCATCAAATTGATGGCACTTTTAATATTGTCTGTTGTCGCCAGTCATTTGTT AATAAATGGCGGTGTATTTTCGGAAGCGTCCTACTTCAAATTTTTTCGGGGTTTGTCATGCTTTCTCCGCTTACTTGTGGAACGAGCGTGCAGATGTTCC AGACGCCGCGCTCCGGCCGCTCTGGCCCAATGCTTCCGGAAGGGATAGGCTTAAAAGTGAAATATAAAGGCACATCAGGGAAACCCCTGGCACATATAGG GCGATCTCCTACAGCGCCCAATGAACAGTTCGTCTTGTTGTTTAATCAGATGCTTGCTAGTGGCCATCATAGTGATTACGATGCGCGCACTTGAAAGAGC AAACACTCAATTGGATGAGTCTTCCGACTGCTCTTCGATACTGTCCCGCGCCGCTGCAACTCCAATAGGCGCACGACCGTAATCCTAATAAAGGCCATGG
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| DNA Sequence for Gene |
>Pfl01_5596
ATGTCCTACTCAAGCAAACTTTCCGCCCATTACCTCGAACTCGCTAAAGTCTCTGTTTCCAAAGAGAATTTTGCGGGCGAAGACGTTCGCTTTTCGAGCG AATTCGAGGCGCTGGAAAGCGAGCTGGCCAAAGCCTCGTCGATGCACGAAAGCGGGCAGATCGACTGGCTGAAAATTCGCGAAAACAGCGAAAACCTCCT GCGTACCCAATCCAAGGATTTGCGTGTCGGCGCCTGGCTGACGTGGTCGCTGTACCAGCGTGAATCCTTCCCCGGCCTGCTGGCCGGCCTCGGTCTGCTG CACCACTTGTCGGAAAACAATTGGGCCGAAGTTCACCCGCTCAAACCCCGCACCCGGGCCGCCGCCATCGGCTGGCTGGTGCCGCGTCTTGAGCAGGTCA TCACCGAGAACATCGCGATCAAGGAACAGCTGCCGATGTTCCGGCAACTGTCCGAGCATCTGTCCGGTCTCGACGCCGCCTGCACCGAGCATCTGGGCGA TGATGCGCCACTGCTGCTGCCGCTTTCCCGCCGTCTGAAAACCATGATCCAGCGCGCCGCCGACAACCAGCCGGCACCCGGTGTTGTGGGCGCGGCGGTG GCGCAGGTCAAGCAGGCCGCCAGCCAGTTGCTGGCGCCGGGCGCGCCGATCGACAACGAGAAAGAAGCCCACAAGGCCCTGCGTGCACAGCAGGAAAGCG CCCGCCCGTTGTGCGCCTGGTGGCTCAAGCAGAAAGCTACCGACCTGCGCGCCCTGCGCCTCAACCGCACCTTGCTGTGGATGACGATCGACGCGGTGCC CGAGCGCAACGCCGAGCAGATCACCGTGCTGCGCGGGTTGCCGGTCGACAAGCTCAAGCAGTATCAGGACCGTTTCGATCAGGGCAAATACGCCGACCTG CTGGTGGAACTGGAGGCGAGCCTGGCGAAGGCGCCGTTCTGGTTCGATGGCCAGAGGATGGTCTGGGAATGTCTCCAGAACCTCAACGCCGAGCTGGCCA TGCGCGAAGTGGAAATCCACTTCGCGCTTTTGATTCAACGCCTGCCCGGCATCATCGAGCTGCGTTTCCATGACGGCGCGCCGTTCGCCGATCCGTCCAC CCGGGCGTGGATCGCCGCCAACGTCATGCCGCACCTGCAAAGCGCCAGCGCGCCGCGCAAGGTCGAAACCGAAAACGCCGAAACCCAGCCGGCCTGGGAA AAGGCCCTCGAAGAAGTCCAGCCGATCCTGCGCAAGGAAGGCCTCAAGCCCGCAGTGCAGATCCTCAAGCAGGGGCTGCAATCGGCGCACGGCGGGCGCG AACGCTTCTTCTGGCAGTTCGCCCTCGCGCGGCTGTGTTTCCTGGCCAAGAAATACGAACTCGCCAAGAACCAGCTCGAAACCCTCGATCAGACATTACA GGACTCAGGCCTGCACGCCTGGGAGCCCGATCTTGCATTGGAAGTGCTGCACCTGCTGCACAGTTGCTGCGAGTTGTTACCGCAGAACCATGCCGTACGT GAACGCAAGGAAGAGATTTATCGCAGGCTGTGCCACCTCGATCTCGAAGTGGTACTCGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCAGGGCCACAACCGCAAGGAGAAAAGCCATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGG TGCTCAGGAAGAGATTGAACTGCCGCTGAAGCTGCTGGCAATCGGTGACTACACCCACCGCAAGGACGATCGCAAGATCGAGGATCGCAAGCCGATCAGC ATCGACAAGATGACCTTCGACGAAGTGCTGGCCAAGCAAGAGCTGGGTCTGACGCTGAGCGTGCCGAACCGTCTGCAGGAAGATGGCGAGGCCGACGAGC TGGCTGTGCAACTGCGCGTCAACTCCATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTGCCTGAGCTGAAAAAACTGATGGAACTGCGCGACGC GCTGGTGGCCCTCAAAGGCCCGCTGGGTAACGCACCTGCGTTCCGTAAAGCCATCGAAGGCGTGCTCGCCGACGACGAATCCCGCGGTCGCGTACTCGGT
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| Amino Acid Sequence |
>ImpA-like protein
MSYSSKLSAHYLELAKVSVSKENFAGEDVRFSSEFEALESELAKASSMHESGQIDWLKIRENSENLLRTQSKDLRVGAWLTWSLYQRESFPGLLAGLGLL HHLSENNWAEVHPLKPRTRAAAIGWLVPRLEQVITENIAIKEQLPMFRQLSEHLSGLDAACTEHLGDDAPLLLPLSRRLKTMIQRAADNQPAPGVVGAAV AQVKQAASQLLAPGAPIDNEKEAHKALRAQQESARPLCAWWLKQKATDLRALRLNRTLLWMTIDAVPERNAEQITVLRGLPVDKLKQYQDRFDQGKYADL LVELEASLAKAPFWFDGQRMVWECLQNLNAELAMREVEIHFALLIQRLPGIIELRFHDGAPFADPSTRAWIAANVMPHLQSASAPRKVETENAETQPAWE KALEEVQPILRKEGLKPAVQILKQGLQSAHGGRERFFWQFALARLCFLAKKYELAKNQLETLDQTLQDSGLHAWEPDLALEVLHLLHSCCELLPQNHAVR ERKEEIYRRLCHLDLEVVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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