Pseudomonas fluorescens Pf0-1, Pfl01_5551
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGGCTGAAACAGCACTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGCAGCGCGTTGAAGAGTCTGGTCAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCCCTGGTTCAGT GGGAAAACGACAAACCGACCGTAGTTGCGCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCGAGCAGGAAATCGTCCACGAAGACCC GGTCTTCGCTGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCCTACGGCAGGAGACATC
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| DNA Sequence for Gene |
>Pfl01_5551
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAACGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGCAGCGGCGAGGCGTACGTCACGCATCCTCTTGCCGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAGGAAGCGCTGCAAGCGCAGTTCGGTGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCTGAAAACTTCCAGAAGATGGCGATGGCGATGGCACGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAGAAACGCCGGCGCATCGCCAAGGAAACCCTCGAGATCTACGC CCCTATCGCCAACCGGCTGGGCATGCACGCGATCCGCATCGAATTCGAAGACCTCGGCTTCAAGGCGATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCCGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCCTCGGCCACTGCCTCGCCATCGACGGCATCCAGGGTGAAGTCA GCGGTCGCCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTATGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGTGCTGTACATAATTTGTACAAACCGTTGCCGGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCATACCACGCTGTTCGGCATGCACGGTGTACCGATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAGTCCAGCGGCGACGAGCAGCCGAAAGGCACTCACGCCCGCGCCCGTCAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAACGCGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCCTACGCGGTGCACACCGACGTCGGCAACAGCTGCATCGCCTGTCGGATCAACCGTCGTCTCGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATCGTCAGCGCTCCTGGCGCACGGCCGAACCCGGCGTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGGACCCACATCCGCCATGCGCTGAAACTGCAACGCCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTGCTCAACGGCTTCGACAGC GCGCTGGAACAGATTCCGGCCGAACGCGTGAAGGCGATGCTCACCGAGTACCGCCTCGAACTGATCGAAGACCTGCTCGAAGACATCGGACTGGGCAACC GTATGGCCTATGTCGTGGCGCGCCGCCTGCTCGGCGAAGGCGAACAACTGCCAAGCCCGGAAGGTCCGCTGGCGATTCGCGGCACCGAAGGCCTGGTTCT CAGCTATGCCAAATGCTGTACGCCGATCCCGGGCGACCCGATTGTCGGTCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGCGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCAGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT TGTCCAGTTGGTGGTCAGCGTCCACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTGATCCGCATCACCCGCATGCGT GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCACCTAATTACAAGGAGTCATTCATGACCAAAACCGTTATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCTCAGGCGATCAAGGCCGGTA ACACCGTTTACATGTCGGGGCAGATTCCCCTCGATCCAAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTGAA AGCCGTGGCCGAAGCCGCCGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCGTACCCGGCGCGCGCCGCCATCGGCGTGGCAGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATTCTGGTCATCG AGTAATGCGCACGGCGCGGCCTCAGACGCCGCGCCGATTGCTCTGCGGTAAAGAAAAGGTTTTGAAAGGATTCCACCATGCGCAAAGCGCTTGCTCTCTC
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| Amino Acid Sequence |
>(p)ppGpp synthetase SpoT/RelA
MPSIDALADRLSTYLGNDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLGHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALEQIPAERVKAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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