Pseudomonas fluorescens Pf0-1, Pfl01_4078
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CACCGAAAAAGGCATCGTCGAGCGCCCGGACACCGCGAAAATGGCGCAGTTGATGTGCCGCAAGCGCTTGCATTGATTGGTTTGATGTCTACGTTGTCTT CTTCGCGAGCAGGCTCGCTCCCACAGGTTTTGTGATCGTTACAGAACCTTGTGAGAGTAAGCCTGCTCGCGAAGAGGCCTTGAAAGTCAATAAACATCCG CAATTTCGTCCCGAAATTTGCATTCAGGGAAGCTCTGAGCCTCTCTCGTCCCCGTTAAGCCTGTCATCGGTCATCTAACTATGCTCCATGCGCATCTGGG GGATAGGTGCGTGGCGGCTCTTGTGATAACATCCGGCGTTTTCCGAGGCAGTCCCACGGGGTTGTCTTCACTGCGCAAATCCAGGGTCAACTTGTCGATT TGTCGTAAGTCGGCGCATGGCACTCGGCCTGCATCGACGAGCTTCGTGCGTCCCCTATGGATATGGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>Pfl01_4078
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAACAGTCCTATCTCGACTACGCGATGAGCGTGATCGTCGGCCGTGCAC TGCCGGATGCGCGCGATGGCTTGAAGCCCGTGCACCGTCGCGTGCTGTTCGCGATGAGCGAGCTGGGCAACGACTTTAACAAGCCGTACAAGAAATCTGC CCGTGTCGTCGGTGACGTGATCGGTAAGTATCACCCGCACGGTGATACCGCGGTGTACGACACCATCGTCCGCATGGCGCAGCCTTTCTCCCTGCGTTAC CTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAATGCCGCGGCCATGCGATACACCGAAGTGCGCATGACCAAGCTGGCGCACGAGC TGCTGGCCGACCTGCACAAGGAAACCGTGGACTGGGTGCCGAACTACGACGGCACCGAACTGATCCCGGCGGTCATGCCGACCCGCGTACCGAACCTGCT GGTCAACGGTTCCAGCGGTATCGCCGTGGGCATGGCGACCAACATTCCGCCGCACAACCTTGGTGAAGTCATCGACGGTTGCCTGGCCCTCATCGACAAC CCCGAGCTGACCGTCGATGAGCTGATGCAATACATTCCCGGTCCGGACTTCCCGACTGCCGCGATCATCAACGGTCGCGCTGGCATCATCGAAGCCTACC GCACCGGCCGTGGCCGCATTTACATGCGCGCCCGCTCGATCATCGAAGACATCGACAAGGTCGGTGGCCGTCAGCAGATCGTCATCACCGAACTCCCTTA CCAGCTGAACAAGGCGCGTCTGATCGAGAAGATCGCCGAGCTGGTAAAAGAGAAGAAACTCGAAGGCATCACCGAACTGCGCGACGAGTCCGACAAGGAC GGTATGCGCGTCGTGATCGAACTGCGTCGCGGCGAAGTGCCTGAGGTGATCCTCAACAACCTCTACGCCCAGACCCAGCTGCAATCGGTATTCGGCATCA ACATCGTTGCGCTGATCGACGGCCGTCCGCGGATCCTGAACCTCAAGGACCTGCTGGAAGCCTTCGTCCGTCACCGTCGCGAAGTGGTTACCCGCCGTAC CGTGTTCGAACTGCGCAAGGCGCGCGAGCGTGGTCACATCCTCGAAGGTCAGGCCGTTGCCCTGTCGAACATCGACCCGGTCATCGCTCTGATCAAGGCT TCGCCGACGCCGTCGGAAGCCAAGGAAGCGCTGGTCAGCACGCCGTGGGAATCCACTGCCGTGGTCGCGATGGTGGAGCGTGCCGGTGCCGATTCTTGCC GTCCCGAAAACCTCGATCCGCAATACGGTCTGCGCGACGGCAAGTACTTCCTGTCGCCAGAGCAGGCGCAAGCCATTCTGGAACTGCGTCTGCACCGCCT GACCGGTCTGGAACACGAAAAGCTGCTGGCCGAGTATCAAGAGATCCTCAATCAGATCGGCGAGCTGATCCGCATCCTCAACAGCGCCGTGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGTGATCCGCGCCGAATACGGCGACGTGCGCCGCACCGAGATCCTCGATGCCCGTCTCGACCTGACCCTGGGCGACA TGATCCCGGAAGAAGAGCGCGTCGTGACCATTTCCCACGGCGGTTATGCCAAGACCCAGCCGCTGGCGGCTTACCAGGCCCAGCGTCGTGGCGGTAAAGG CAAATCGGCTACCGGCGTGAAGGATGAGGACTACATCGCTCACCTGCTGGTCGCCAACAGCCATACCACGCTGCTGCTGTTCTCCAGCAAGGGCAAGGTG TACTGGCTGAAAACCTACGAAATTCCGGAGGCGTCCCGCGCCGCCCGTGGTCGTCCGCTGGTCAACCTGCTGCCGCTGGATGACGGTGAATACATCACCA CCATGCTGCCGGTCGAGGAATACACCGAAGGTCACTACATCTTCATGGCCACCGCCAACGGCACCGTGAAGAAGACCCCGCTGGAATCCTTCAGCCGTCA GCGCAGCGTCGGTCTGATCGCGCTGGAACTGGACGAAGGCGACGTGCTGATTTCTGCCGCCATCACCGATGGCGAGCGTGAAGTGATGCTGTTCTCCGAC GGCGGCAAAGTGACCCGCTTCAAGGAATCCGACGTGCGTGCCATGGGCCGTACCGCCCGCGGTGTGCGCGGCATGCGTCTGCCGGAAGGGCAGAAGTTGA TTTCGATGCTGATCCCGGAAGAAGGCAGCCAGATCCTCACCGCTTCCGAGCGTGGTTATGGCAAGCGTACCGCGATCACCGAGTTCCCTGAGTACAAGCG TGGCGGCCAGGGCGTGATCGCCATGGTCAGCAACGAGCGTAACGGCCGTCTGGTCGGTGCGGTCCAGGTGCTCGACGGCGAGGAGATCATGCTGATTTCC GACCAGGGCACGCTGGTGCGTACCCGTGTCGACGAAGTCTCCAGTCTGGGTCGTAATACCCAGGGCGTGACCCTGATCAAACTGGCCAAGGATGAAACCC TGGTCGGTCTGGAGCGGGTTCAGGAGCCGTCGGAAGTCGAGGGTGAAGAGCTTGAAGGTGAAGAAGGTGTCGAACTGGAAGATGGCGTGATCGGCGCCGA GCCGGACGATGCGGTCGACAACCTGCAGGCGGACGCCGCAGACGAAGAAGAGTCGCAAGACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCAAATCGTAGCAGGGCAGAGTGTTTGCTCTGTCCGCTACCGTGATTGCATAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGTCCC GCTGCGCTGCCTGAAGCTGTCCTGTTGCGTGCCCAGTCCGAGATGCTCGACTGGCACGGCAAGGGTCTGTCGGTCATGGAAATGAGCCATCGCAGTGATG ACTACGTGGCCATCGCCGAGAAGGCCGAACAAGACCTGCGCGACCTGCTGTCCATCCCCTCCAATTACAAAGTGCTGTTCCTGCAGGGCGGTGCGAGCCA ACAGTTCGCCGAGATTCCGCTGAACCTGCTGCCTGAGAACGGCACTGCCGACTATGTCGAAACCGGCATCTGGTCGAAGAAAGCCATCGAGGAAGCGCGT CGCTTCGGCAACATCAACGTTGCTGCCAGCGCCAAGCCTTATGACTACCTGGCCATCCCTGGCCAGAACGAGTGGAAGCTGACCCCGGGTGCGGCCTATC
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALVSTPWESTAVVAMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSAVRLM EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV YWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSD GGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLIS DQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQEPSEVEGEELEGEEGVELEDGVIGAEPDDAVDNLQADAADEEESQD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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