Pseudomonas fluorescens Pf0-1, Pfl01_3077
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCCGCGCATGTCGGTAGCGCAGATCATCAGCGAAGGGCTGGAGGTGCATTGCCAGTCCACCGCCGAGGAGTGCGACGATCAGGTGATCCGCGTGCTC AAGGAAGTGGGCCTCGACCCTGAAAGCCGTCACCGCTACCCCCATGAGTTTTCCGGCGGGCAGCGTCAGCGCATTGCCATTGCCCGGGCACTGGTGCTCA AACCGGCGCTGATCCTGCTCGATGAGCCGACTTCGGCGCTGGATCGCACCGTGCAGAAACAGGTGGTCGCCCTGCTCCGCCAGCTACAGGAAAAACACGG CCTGACGTATCTGTTCATCAGTCATGACCTGGCCGTGGTGCGGGCGCTGGCCCACGACATGATCGTGATCAAGGACGGCAAGGTGGTCGAACGCGGCGCC AGCCATGACGTGTTCGATTCACCGCAGCATCCCTATACCAAAGAGCTGTTGGCCGCGGCGCATCCGGGATAGGCATAATCGCGCCACCTGACTTACGCCA
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| DNA Sequence for Gene |
>Pfl01_3077
ATGGACGCCGCCATGAACACCACCGAAAGCCTCAAGGATTACCAACGGGTTCGCGCCCTGGCGATCCGTTCGTTGTTCGAGATCATCGAGCAATCCAGTG AGGGCACGGTGATTGTCGACCGCGACGCGAACATCGTCTGGATGAACGAGCGCTACGCTCGGCGCTTCGGGCTCGACTCCGCCGCCGGGGCCATCGGCAA GCCTTGCGAAAGCGTGATCCCCGGCAGCCTGTTGCGTGAAGTGGTACGCACCGGTCGGCCGATTCTGCTGGACATGCAGGACACCCCGAAAGAACCGCTG GTGGTGATGCGCCTGCCGATCCATGACGACGCCGGCGCGGTGATCGGCGCCATCGGTTTTGCCCTGTTCGACGAACTGCGCACGCTGTCGCCGATGCTCA AGCGCTACCTGAGCATGCAGGAAGAACTGGCCTCGACCCGTTCACTGCTGCGCGCCCGGCAGACCAAATACAACTTCGCGCACTTCATCGGCACCAGCGC TGCCAGCCTGGAAGTCAAACGCCGTGCCCGTCGCAGCGCCAGTGCCGAGTCGCCGGTTCTGTTGCTGGGCGAAACCGGCAGCGGCAAGGAGTTGCTGGCG CAAGCGATCCACGGCGCTTCGCCTCGGGCGCACAAGGCGTTCGTCAGCATCAACAGCGCAGCGATTCCCGAGGCGCTGCTCGAGGCCGAGTTCTTCGGCA CCGCGCCCGGCGCCTTCACCGGCGCCGACCGCAAGGGCCGCACCGGCAAGTTGCAGATTGCTCAGGGCGGGACGCTGTTTCTCGACGAGATCGGCGACAT GCCGCTGCCCTTGCAAAGCAAATTGTTGCGGGTGTTGCAGGAAAAGGAGTTCGAACCTGTAGGCTCCAACGACGTGATCCAGAGCGATGTGCGGGTGATT GCGGCGACCTCGACGGATCTGGAGGCGGCGATCAAGCGCGGCGAATTCCGCGCCGACTTGTATTACCGCCTCAACGTATTGCCAATTCAGGTGCCGCCAC TGCGTGAACGACTGGACGATCTGCCGGCCCTCAGTGAGGCGATTCTTGAAGAACTGCGCAGTCAACATGAACTGAACCGCGAAGCGCTGGAGCTGCTGGG TCAGCATGCCTGGCCAGGCAATATCCGCGAGCTGCGCAATGTATTGGAGCGGGCAGCGTTGCTCAGCGATGACTTGATGCTGACGGCGGATGACATTCGC TCTGCAATTGGAACGTTTACACCGGTTGAGCGAACGCTGGCACCCTTGCCTGAACCGGCAATCAACGAGACCTTCAGTCAAGCCCGGGAGCGTTTTGACC GGCAGTTGATTCAATCCACCCTCGCGCAATGCGGGGGCAAGGTGATTGAGGCGGCTGAGCGGTTGGGACTGGGCCGTTCGACGCTTTACAAGAAAATGAT TGCGCTGGGGATCGCAGAGTCTCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGACACAGCTCTCCAAATCAAGACAACATCAAAAGCATCGCGGGCAAGCCCGCTCCCACAGGGGAATGCGTTCAACTGTGGGAGCGGGCTTGCCCGCG AAAGCGTCCTCTCAGTCATAGAAGTCTCCAAAAAGAGACAAAACCTCGAAAGCCATCACCAAAAATCAAACTAATTCCTTTTATTTCAACAAGTTAACCA TCTGGCACAGATCTCGCTATAGCCCTCCCCACACCCGTTCCACCCACAAAAATAACAATCGAAGGAGCACACCATGAGTGTGATCATCGCCTTGGCAGCC CTCGCGCTGCTGATGCTCGCGGCCTATCGTGGCTACAGCGTTATCCTTTTTGCCCCGATCGCCGCCCTCGGCGCCGTCCTGCTCACCGACCCGTCTGCCG TCGCCCCTGCTTTCACCGGGGTGTTCATGGAGAAAATGGTCGGCTTCATCAAACTCTACTTTCCCGTGTTCCTGCTCGGCGCCGTGTTCGGCAAGCTGAT
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| Amino Acid Sequence |
>sigma54 specific transcriptional regulator
MDAAMNTTESLKDYQRVRALAIRSLFEIIEQSSEGTVIVDRDANIVWMNERYARRFGLDSAAGAIGKPCESVIPGSLLREVVRTGRPILLDMQDTPKEPL VVMRLPIHDDAGAVIGAIGFALFDELRTLSPMLKRYLSMQEELASTRSLLRARQTKYNFAHFIGTSAASLEVKRRARRSASAESPVLLLGETGSGKELLA QAIHGASPRAHKAFVSINSAAIPEALLEAEFFGTAPGAFTGADRKGRTGKLQIAQGGTLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNDVIQSDVRVI AATSTDLEAAIKRGEFRADLYYRLNVLPIQVPPLRERLDDLPALSEAILEELRSQHELNREALELLGQHAWPGNIRELRNVLERAALLSDDLMLTADDIR SAIGTFTPVERTLAPLPEPAINETFSQARERFDRQLIQSTLAQCGGKVIEAAERLGLGRSTLYKKMIALGIAESQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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