Pseudomonas fluorescens Pf0-1, Pfl01_2844
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGATTCGGCACGCATCGGCAGCTCCCGCGCCATTACCCAGTTGATCCTCAACCTGGTGGAAGGCACGCCGATCCGCCTGTTCGACGGCGGCGAGCAGA AGCGCTGCTTCACCGACATCGCCGACGGCGTCGAAGCACTGGCGCGGATCATCGATAACGACAACGACGTCTGCAACGGCCAGATCATCAACATCGGCAA CCCGGACAACGAAGCGAGCATCCGCCAGTTGGGCGAAGAACTGCTGCGCCAGTTCGAGGCTCACCCGTTGCGCAGCAACTTCCCGCCGTTCGCCGGTTTC CGCGACGTGGAAAGCAAGGCGTTCTACGGTGCCGGTTATCAGGACGTCGAGCACCGCAAGCCGAGCATCGCCAACGCCAAGCGCCTGCTGGACTGGACGC CGACCGTCGAAATGCGCGAGACCATCGGCAACACGCTGGACTTCTTCCTGCGCGAGGCCATGCTCGAAATCGAGAGGCCTTCCAACAAAGAGGCATGCTG
|
|
| DNA Sequence for Gene |
>Pfl01_2844
ATGCAGGCCGGTTTGCGCATCGATGTCGACACCTTTCGCGGCACCCGTGAAGGTGTGCCGCGCTTGCTGGAAATCCTCGATGAAGCGCAGATCAAAGCGA CGTTTTTCTTCAGTGTCGGCCCGGACAACATGGGCCGGCACCTGTGGCGCCTGATCCGTCCGCAGTTCCTCTGGAAGATGCTGCGCTCCAACGCCGCCGG CCTGTACGGCTGGGACATCCTGCTGGCGGGCACGGCGTGGCCGGGCAAGCCGATCGGCCGCGACCTCGGGCACCTGATGCGTCAGGCCCGGGCCGCCGGC CACGAGGTCGGCCTGCACGCCTGGGATCACCACGGCTGGCAGGCCAATGCCGGGCACTGGAGCGCTGCGCAACTGGTCGAGCAGATCCGTCAGGGCGTCG ATACCTTGAGCGACATCCTCGGAGAAAAGGTCACGTGTTCAGCCGCCGCCGGTTGGCGTGCGGACGAGCGTGTGATCGAAGCCAAGCAGGCCTTCGGCTT TCGCTACAACAGCGATTGCCGTGGGCAGCGGGTGTTCCGTCCGTTGCTGGCCGATGGCTCGGTCGGTGCGCCGCAGATTCCGGTGGACCTGCCGACCTTC GATGAAGTGGTCGGGCCGAGCGTGGCAGCGAAGGATTTCAACGCCTTCATCCTCGACCGGTTCCGCCCTGAAAACCTCAACGTCTACACCATTCACGCCG AAGTAGAAGGGATTCTGATGGCCGATGATTTTCGTCGACTGCTGGCCGAGGCACGCCAGCAAAACATTCACTTCCAACCGTTGGGCGATTTGCTGCCCGA GTTTCTCAACTCCTTGCCCGTCGGCCGCGTGCAACGCGGCGCACTCGAAGGCCGTGAAGGCTGGCTGGGAGTGCAAGGCGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAACGCTGGGCATTGCCGCTGTTGCTGGGGATTTTCCTGCTGGCCTATCTGCTGCCGCTGGGCAGCCATGGTTTGTGGATTCCCGATGAAACCCGTTA TGCGCAGATCAGCCAGGAGATGCTGCTGAGCGGCAACTGGGTGTCGCCGCATTTCATGAACCTGCGTTACTTCGAAAAACCGGCGGCCGGTTACTGGATG ATTGCCATCGGGCAGGCCGTGTTCGGGCAAAACCTGTTCGGCGTGCGCTTTGCCTCGGCCCTGAGCACCGGGCTGAGCGTGTTGCTGTGCTTCCTCATCG CCCGACGTTTGTGGAACGAGCCGCGCAAAAGCTTCGTCTGCGCCCTGCTCTACATGAGTTTCGTCATCGTCGCCGGCCAGGCCGGTTACGCCAACCTCGA TCCGCAATTCACCTTCTGGGTCAACCTGAGTCTGGTGGCGCTGTGGTTCGCCCTCGACAGCCGCGCCAACGGCCAGCGCCTGGCCGGTTGGGCAGTGCTG
|
|
| Amino Acid Sequence |
>polysaccharide deacetylase
MQAGLRIDVDTFRGTREGVPRLLEILDEAQIKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAAGLYGWDILLAGTAWPGKPIGRDLGHLMRQARAAG HEVGLHAWDHHGWQANAGHWSAAQLVEQIRQGVDTLSDILGEKVTCSAAAGWRADERVIEAKQAFGFRYNSDCRGQRVFRPLLADGSVGAPQIPVDLPTF DEVVGPSVAAKDFNAFILDRFRPENLNVYTIHAEVEGILMADDFRRLLAEARQQNIHFQPLGDLLPEFLNSLPVGRVQRGALEGREGWLGVQGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|