Pseudomonas fluorescens Pf0-1, Pfl01_2330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1335 | 1370 | 3.0E-16 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 656 | 695 | 2.9E-4 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1409 | 1428 | 3.9E-5 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 966 | 1441 | 6.7E-79 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1327 | 1347 | 3.9E-5 |
| CDD | cd20743 | FIX_RhsA-like | - | - | 28 | 117 | 1.8978E-42 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 781 | 965 | 2.3E-28 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 327 | 353 | - |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1089 | 1124 | 0.0069 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 718 | 754 | 4.9E-7 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1360 | 1441 | 7.8E-26 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 760 | 801 | 1.5E-10 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 843 | 872 | 0.008 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 697 | 732 | 1.3E-6 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 305 | 353 | - |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 505 | 743 | 3.4E-26 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1468 | 1490 | - |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 760 | 787 | 4.9E-5 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 356 | 428 | 4.0E-15 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 864 | 899 | 4.3E-5 |
| PANTHER | PTHR32305 | - | - | - | 708 | 1442 | 5.4E-38 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 718 | 757 | 7.3E-5 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1452 | 1490 | - |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 697 | 738 | 1.4E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.