Pseudomonas fluorescens Pf0-1, Pfl01_1560 (flhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTATGCGAAGCCCACTTCAGTATCGCCGGTGACGTACTTTGCATGACGGCGAGGCAATACTTTCGCTTCGGGGTGGATGTGCCTGCAATCGAGATCA GGGATCTGCCGTTTATTCGGTGTCAGTGGGCCTTGAATTTGATGTTGGGTCACACGAAGTCGACCTCCGTTGCGCCTGCTTCGGTCGTGGTGCTCATGCA GGCAGAAGAAACACTGGTCGATGTGGAAGGCGTCAGCGTATTCAAAGGTACTCCCTACCTCGACAAAACCAGTCTTGCGTTTGGCTCCATTAGCCCATCA CAGATTCTTATTGCGTGATTGTTCGGGCCTCGCCTCGCGGGATACCTCCGCGCTGAGGCGAGGCTGTTTGTTGATCGGTTAATCCTCTCGCAAACCCTCT CTATTTCAATCCCCCGCAAAAGTTGGAAGGCTTCTTGCAGTAGCCGCCGTGCGCCTGCTTCGGGCGTCAAAAGTTTGCTTTAAAGGAACGGGGAAAACCG
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| DNA Sequence for Gene |
>Pfl01_1560
|flhA
GTGGATCGCTCTCAGTTAATCAACAGTGCTCGCTCGAACATTGCCGACCTCAGTCGAGGCAATCTGGGTGTGCCGCTGTTGCTGCTGGTCATGCTGGCGA TGATGATGTTGCCGGTGCCGCCGTTCCTGCTCGACGTGTTCTTCACCTTCAACATTGCCCTGTCGATCGTCGTGCTGCTGGTCTGCGTGTACGCCTTGCG GCCGCTGGATTTTGCGGTGTTCCCGACGATCCTGCTGGTGGCGACGCTGTTGCGACTGGCGCTGAACGTGGCGTCGACGCGGGTGGTGATGCTCCACGGT CAGGACGGCCACGCCGCCGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTCTTCGCGATCCTGA TGATCATCAACTTCGTCGTGGTGACCAAGGGTGCTGGCCGGATCTCCGAGGTGAGCGCTCGCTTCACCCTCGATGCGATGCCCGGCAAGCAAATGGCGAT CGACGCCGACCTCAACGCCGGTCTGATCGACCAGGCGCAGGCCAAGGCCCGTCGTCAGGAAGTGGCTCAAGAGGCAGAGTTCTACGGCTCGATGGATGGT GCCAGCAAGTTCGTCCGTGGTGACGCCATCGCCGGCCTGCTGATTCTGTTCATCAACCTGATCGGCGGCATGGCCGTCGGTATCTTCCAGCACAACATGA CTTTCGCCGACGCGGGCAAGGTTTACGCCTTGCTGACCATCGGTGACGGTTTAGTGGCGCAATTGCCATCACTGTTGTTATCTACAGCTGCAGCGATCAT GGTGACTCGTGCTTCCGGCTCGGAAGACATGGGCAAGCAGATCAATCGCCAGATGTTCGCCTCGCCCAAAGCGCTGGCGGTGGCGGCCGGTCTGATGGCG GTCATGGGTCTGGTGCCGGGCATGCCGCACTTCTCGTTCCTGAGCATGGCTGCCCTGGCTGCCGGTGGTGCTTACCTGTTCTGGAAGAAGCAGAACGTCG CCAAAGTGCAGGCGCTGCAAGAGGTTCAGCGTCAACAGGAACTGCTGCCGTCGCCGGCCCGCGCCATGGAAACCAAGGAGCTGGGCTGGGACGACGTGAC CCCGATCGACATGATCGGCCTGGAAGTCGGCTACCGCCTGATTCCGCTGGTGGACCGCAACCAGGGCGGGCAATTGCTGGCGCGGATCAAGGGCGTGCGC AAGAAGCTCTCGCAGGATCTGGGCTTTCTGATGCCGACCGTGCACATCCGCGACAACCTCGACCTCGCGCCGAGCGCCTATCGCCTGACCCTGATGGGCG TGATTCTGGCCGAAGCCGAGATCTACCCGGATCGCGAACTGGCGATCAACCCGGGGCAGGTCTACGGCTCGCTCAACGGCATTACCGCCAAAGATCCGGC TTTCGGCCTGGAGGCGGTGTGGATCGAAGTCAGCCAGCGCGCCCAGGCGCAATCGCTCGGTTACACCGTGGTCGATGCCAGCACCGTGGTTGCGACCCAC TTGAACCAGATTCTGTACAAGCACTCCAGCGAGCTGATCGGCCACGAAGAAGTGCAGCAATTGATGCAATTGCTGGCCAAGAGCTCGCCGAAACTGGCTG AAGAGCTGGTGCCGGGCGTGGTCACGCTGTCGCAACTGCTCAAGGTGTTGCAGGCGTTGCTGGCCGAGCACGTGCCGGTGCGCGATATCCGCAGCATTGC CGAGGCCATCGCCAACAATGCCGCCAAGAGTCAAGATACCGCCGCTTTGGTGGCTGCTGTGCGGGTTGGCGTATCGCGCGCCATCGTCCAAAGCATTGTA GGGACTGAGTCGGAGCTGCCAGTTATCACGCTGGAGCCAAGGTTGGAACAAATATTGCTCAATAGTCTGCAGAAGGCAGGACAAGGCTCGGAAGAGGGCG TTCTGCTGGAGCCGAGCATGGCCGAGAAGCTGCAGCGTTCGCTGATCGAAGCGGCGCAGCGCCAGGAAATGCAAGGTCAGCCGGTGATTCTGTTGGTAGC AGGCCCGGTTCGCGCGATGCTCTCGCGCTTTGGTCGCCTGGCAGTTCCCGGACTGCATGTGCTGGCCTACCAGGAAATTCCGGACAACAAGCAAGTGACC ATCGTTGCGACAGTAGGGCCCAACGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGGTTTATGCAAGTTAAGCGTTTTTTCGCCGCCGATATGCGTCAGGCCATGAAGCTGGTTCGTGATGAGCTGGGCGCTGATGCCGCCATCATTGG CAACCGCCGCATCGCCGGCGGCGTCGAGCTGACGGCGGCGCTCGATTACAAACTGTCTGCGCTGGCCCCGCGCGTTCCGAACATGGAACTCGAGGATGAG CTGCGCAAGACCCAGTCGCGCATCGTCACCGCCCAGGCCGAGCTGAGCCTGCGTGGCGAAGCCGACGGCAACACCAATCGCCAGTTGTTCGCCGGGCTGC CGTTGACGGCCGGCCTGCCGCTGACCGCTGCCGAGCCGCTGACCGAACCGACCTACGAAGCTCCGGCTCGTCCGGCACCAGCGCCTGCAGCGGTTTCCGC TGGCGTCGATCCGCGTGCTCTGGACTCGATGCGTTTCGAACTCAACAGCCTGCGCGAACTGATGGAAGTGCAACTCGGCACCCTGGCCTGGAACCAGCTG
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRSQLINSARSNIADLSRGNLGVPLLLLVMLAMMMLPVPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAVFPTILLVATLLRLALNVASTRVVMLHG QDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKARRQEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMAVGIFQHNMTFADAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKQINRQMFASPKALAVAAGLMA VMGLVPGMPHFSFLSMAALAAGGAYLFWKKQNVAKVQALQEVQRQQELLPSPARAMETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQDLGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVYGSLNGITAKDPAFGLEAVWIEVSQRAQAQSLGYTVVDASTVVATH LNQILYKHSSELIGHEEVQQLMQLLAKSSPKLAEELVPGVVTLSQLLKVLQALLAEHVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGVSRAIVQSIV GTESELPVITLEPRLEQILLNSLQKAGQGSEEGVLLEPSMAEKLQRSLIEAAQRQEMQGQPVILLVAGPVRAMLSRFGRLAVPGLHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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