Pseudomonas fluorescens Pf0-1, Pfl01_1365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50156
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfo02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfo01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 210 227 8.1E-52
Pfam PF17820 PDZ domain IPR041489 PDZ domain 6 417 469 5.5E-10
Pfam PF13365 Trypsin-like peptidase domain - - 106 239 2.7E-35
Gene3D G3DSA:2.40.10.120 - - - 37 271 1.8E-85
SMART SM00228 pdz_new IPR001478 PDZ domain 278 360 7.1E-15
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 236 361 4.07E-25
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 37 269 3.94E-71
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 38 478 0.0
CDD cd00987 PDZ_serine_protease - - 393 478 4.72939E-17
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 247 396 7.4E-10
Pfam PF13180 PDZ domain IPR001478 PDZ domain 280 369 4.3E-16
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 393 480 2.1E-14
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 38 271 9.3E-98
CDD cd00987 PDZ_serine_protease - - 278 367 1.48913E-25
SMART SM00228 pdz_new IPR001478 PDZ domain 392 471 5.4E-12
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 276 377 2.7E-33
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 136 156 8.1E-52
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 398 475 1.4E-98
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 318 330 8.1E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 115 127 8.1E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 176 200 8.1E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 232 249 8.1E-52
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 388 482 8.4E-18
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 273 382 3.5E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.