Pseudomonas fluorescens Pf0-1, Pfl01_1279
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCGACAACGCCGCTGCGGTCAAGCTGACCCTCGAAGACGGCAGCCAGTACAAGCTCGACGGTAAACTGGAATTCTCCGAAGTGTCGGTCGATCAGAC CACCGGTTCCGTGACCCTGCGCGCCGTGTTCCCGAACCCGGATCACACTCTGCTGCCGGGCATGTTCGTCCACGCGCAGTTGCAGGCCGGTGTGAACAGC GCCGCGATCCTCGCGCCGCAGCAAGGCGTGACCCGCGACCTCAAAGGCACCCCGACCGCACTGGTCGTCGGCCCGGACAACAAGGTCGAACTGCGTCAGC TCAAGGCCAGCCGTACTGTCGGCAGCCAGTGGCTGATCGAGGACGGCCTGAAGGCCGGCGATCGCCTGATCACCGAAGGGCTGCAATTCGTCAAACCGGG TGTTGAGGTCAAACCGACCGAAGCGACCAACGTCGGCAACAAGAACCCGGCCCCCGCTCAGGCAGCTGACAAAGCCGCCGGCGGCAAAGGGGAGTAATCC
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| DNA Sequence for Gene |
>Pfl01_1279
ATGTCAAAATTTTTCATCGACCGTCCGATTTTCGCCTGGGTAATTGCCCTGGTGATCATGCTGGTCGGGGCACTTTCGATCCTGAAACTGCCGATCAACC AGTACCCGAGCATTGCGCCACCGGCCATTGCAATCTCCGTGACCTACCCGGGTGCTTCGGCACAGACGGTTCAGGACACCGTGGTGCAAGTGATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATCACCGCGACCTTCGAGCAAGGCACCAACTCC GACACCGCGCAGGTTCAGGTCCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAGGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCAGTGA AGAACTTCCTGCTGGTGATCGGCGTGGTGTCGCGTGACGGCAGCATGACCAAGGACGACCTGTCCAACTACATCGTGTCGAACATGCAGGACCCGATCTC GCGGACCGCCGGTGTAGGTGACTTCCAGGTCTTCGGTGCCCAGTACGCGATGCGCATCTGGCTCGACCCGGCCAAGTTGAACAACTTCAACCTGACCCCG GTCGACGTGAAAACCGCGATTGCGGCGCAGAACGTCCAGGTGTCGTCCGGTCAGCTCGGTGGCTTGCCTGCCGTGCAGGGCCAGCAGCTGAACGCCACGA TCATCGGCAAGACCCGTCTGCAGACCGCCGAGCAGTTCAAAGAGATTCTGCTCAAGGTCAACAAGGATGGCTCTCAGGTCCGTCTGAAAGACGTCGCCGA CGTCGGCCTGGGTGGCGAGAACTATGCGATCAGCGCCCAGTTCAACGGCAGCCCGGCTTCCGGTCTGGCGGTAAAACTGGCCAACGGCGCCAACGCCCTC GACACCGCCAAGGCACTGCGCAAGACGATTGACGACCTCAAGCCGTTCTTCCCGCAAGGCATGGAAGTGGTGTTCCCGTACGACACCACCCCGGTGGTGA CCGAGTCGATCAAGGGTGTGGTTGAAACCCTGGTCGAAGCGATCGTACTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCGTCAT CACCACGATGACCGTGCCGGTGGTATTGCTCGGCACGTTCGGCATCCTCGCGGCGGCCGGCTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGTTTGCTGGTGGACGACGCCATCGTTGTGGTGGAAAACGTCGAGCGGGTGATGAGCGAAGAAGGCTTGTCACCGAAGGAAGCGACCAAGAAAT CCATGGGCCAGATCCAGGGCGCCCTGGTCGGTATCGCCCTGGTGCTGTCGGCGGTATTGCTACCGATGGCATTCTTTGGCGGCTCCACCGGTGTGATCTA CAAGCAGTTCTCGATCACCATCGTGTCGGCCATGGCGCTGTCGGTACTGGTTGCACTGATCTTCACCCCGGCGCTGTGCGCCACCATGCTCAAGGCGGTT CCACACGGCGAACACGGCACCCCGAAAAAAGGCTTCTTCGGCTGGTTCAACCGTGGTTTCGACCGCAGCGTCAAAAGCTACGAGCGCGGCGTCGGCAACA TCCTGCGCCACAAGGCCCCGTACCTGCTGGCTTACCTGATCATCTTCGTCGGCATGATCTGGCTGTTCCTGCGTATTCCATCGTCCTTCCTGCCGGAAGA AGACCAGGGCGTACTGTTCGCCCAGGTGCAGACCCCGGCCGGTTCGAGTGCCCAGCGCACTCAAGTGGTGGTGGATGAAATGCGTGAGTTCCTGCTGCGT CCGACCAAGGATGGCGGTGAAGGCGACGCCGTAGCGTCGGTGTTCACCGTGACCGGCTTCAACTTCGCCGGCCGTGGCCAGAGCTCGGGCATGGCGTTCA TCATGCTCAAGCCGTGGCACGAGCGGAACGCCGACAACAGCGTGTTCAAACTCGCCGCCCGCGCCCAGCAGCACTTCTTCACCTTCCGCGATGCAATGGT GTTCGCCTTCGCCCCGCCGGCCGTACTGGAGTTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAGGACCGTGCCGGTATCGGTCACGAGCAACTGATG GCCGCGCGTAACCAGTTCCTGGGCATGGCCGCGCAAAGCAAAGTGCTGTCGCAGGTGCGTCCGAACGGTCTGAACGACGAACCACAGTTCCAGTTAGAAA TCGACGACGAGAAGGCCAGTGCTCTGGGCATCACCATCTCCGACATCAACAACACCCTGTCGATTGCGCTGGGCAGTAGCTACGTCAACGACTTCATCGA CCGTGGTCGGGTGAAGAAGGTGTACGTACAGGGCCAGCCGGACTCGCGCATGAGCCCGGAAGACCTCAAGAAATGGTATGTGCGTAACGCCAGCGGCACC ATGGTTCCGTTCTCCGCATTCGCCAAGGGGGAGTGGATCTACGGCTCGCCAAAACTGTCGCGTTACAACGGCGTGGAAGCAGTCGAGATTCTCGGTGCCC CGGCGCCTGGCTATTCCACCGGTGAAGCCATGGCCGAGGTCGAGGCGATTGCTGCCAAACTGCCGAAGGGTGTCGGTATTTCCTGGACCGGTCTGTCCTA TGAAGAGCGTCTGGCAGGTTCGCAGGCGCCGGCACTGTTCGCGCTGTCGCTATTGATGGTGTTCCTGTGTCTGGCGGCTCTCTACGAGAGCTGGTCGATT CCGATCGCCGTCGTGCTCGTCGTACCGCTGGGGATCATCGGGGCATTGCTGGCGACCAGTCTGCGCGGTCTGTCCAACGACGTGTACTTCCTGGTGGGTC TGTTGACGACCATTGGTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAATTCGCCAAGGAACTGCACGAACAGGGCAGCAGTCTGCGCGATGCCGCCAT CGAGGCTTGCCGCATGCGTCTGCGTCCGATCATCATGACGTCCCTGGCGTTCATCCTCGGCGTGGTGCCTCTGGCAATTTCCACCGGGGCAGGTTCGGGC AGCCAGCACGCAATCGGCACCGTGGTGATTGGCGGTATGATCACTGCCACCGTTCTGGCGATATTCTGGGTTCCACTGTTCTTCGTCACTGTGTCGTCCA TGGGTCAGCGCAAAAACGCCGGCAAGGATGACGCCATAGAAACTCCTAAAGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTCTCCATCGCAGTCGCCGCCTTCGTGCTGAGCGGTTGCTCGCTGATACCGGATTATCAGCAGCCGGAAGCACCGGTGGCCGCGCAGTT CCCGCAGGGCCCGGCGTACTCGCCGGCCCAGGCACCGGCGCAGGCCGCTGCCGAGCAGGGCTGGAAACAGTTTTTCCATGACCCGGCCCTGCAACAGCTG ATCCAGGTCGCCCTGGAAAACAATCGCGACCTGCGTGTCGCGGCGCTGAACATCGACGCCTATGCGGCTCAATACCGCATCCAGCGCGCCGACCTGTTCC CGGCCGTGTCGGCCAATGCCAGCGGCAGCCGTCAGCGGGTTCCGGCCCGTGCGTCGCAGACCGGTGAAGCGGCCATCAGCAGTTCCTACTCCGCTACCGT CGGCATCAGCGCCTACGAACTCGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAACAAGCGCTGCAACAATACTTCGCCACCGAAGAAGCGCGCCGCAGC
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| Amino Acid Sequence |
>hydrophobe/amphiphile efflux-1 protein
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKTAIAAQNVQVSSGQLGGLPAVQGQQLNATIIGKTRLQTAEQFKEILLKVNKDGSQVRLKDVADVGLGGENYAISAQFNGSPASGLAVKLANGANAL DTAKALRKTIDDLKPFFPQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAV PHGEHGTPKKGFFGWFNRGFDRSVKSYERGVGNILRHKAPYLLAYLIIFVGMIWLFLRIPSSFLPEEDQGVLFAQVQTPAGSSAQRTQVVVDEMREFLLR PTKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWHERNADNSVFKLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEQLM AARNQFLGMAAQSKVLSQVRPNGLNDEPQFQLEIDDEKASALGITISDINNTLSIALGSSYVNDFIDRGRVKKVYVQGQPDSRMSPEDLKKWYVRNASGT MVPFSAFAKGEWIYGSPKLSRYNGVEAVEILGAPAPGYSTGEAMAEVEAIAAKLPKGVGISWTGLSYEERLAGSQAPALFALSLLMVFLCLAALYESWSI PIAVVLVVPLGIIGALLATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGSSLRDAAIEACRMRLRPIIMTSLAFILGVVPLAISTGAGSG SQHAIGTVVIGGMITATVLAIFWVPLFFVTVSSMGQRKNAGKDDAIETPKEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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