Pseudomonas fluorescens Pf0-1, Pfl01_0990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04407
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0043190 | ATP-binding cassette (ABC) transporter complex |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04407
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33529
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfo02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR33529 | SLR0882 PROTEIN-RELATED | IPR005495 | Permease LptG/LptF-related | 1 | 354 | 6.7E-70 |
| NCBIfam | TIGR04407 | JCVI: LPS export ABC transporter permease LptF | IPR030922 | LPS export ABC transporter permease LptF | 2 | 353 | 3.5E-117 |
| Pfam | PF03739 | Lipopolysaccharide export system permease LptF/LptG | IPR005495 | Permease LptG/LptF-related | 5 | 352 | 3.0E-69 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.