Pseudomonas fluorescens Pf0-1, Pfl01_0394
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCAAACCGATCCTGCAATTCGGCAAGCTGCACGTCGGCCTGACCAAGGTAGAACCGGCCGGTCAGTACGCACTGAAACTGACCTTCGACGACGGTCA CGACAGCGGTCTGTTCACCTGGGATTACCTGTACGAGCTGGGGCGACGTCATGACGCACTCTGGGCGGATTATCTGGCCGAACTCAAAGCCGCCGGCAAA ACCCGCGACCCGGACCAGTCCGTCGTCAAGCTGATGCTCTAGTCCGCGCCTCGGACTGTTTAGAGGGCATTTTCTAGATTCATCTGTTTGAATGCTCCGT TAAAGCGGCCCGGGATCGGCTGCTTGCGAAAAAAATCAATCTCGGGTAACCAATGGAACTGGCAAGTTCCCTGCAGTGCTCTACGACTGTAAAGCAGCTA TGCAGAATCAACGGTCACCCGAGCAGTAGTACCTGGCATTGGCTGTGGAACTGCACAGCAGAAAACCGGGTACTCGTCTCAGGACAATGGAGCGTCGTAG
|
|
| DNA Sequence for Gene |
>Pfl01_0394
ATGAGTAACAAGAATAACGATGATTTGAAGTACCAGGCCTCGGAGAACACCCTGGGGCTGAATCCTGTCGTTGGGCTACGCGGAAAGGATCTGCTGGCCT CTGCTCGAATGGTGCTGACCCAGGCCATCAAACAACCGATCCATAGTGTCAAACACGTCACCCAGTTCGGCCTCGAACTGAAGAACGTGCTGTTCGGCAA ATCCGACCTGCAACCGGCGGGCGATGACCGTCGCTTCGTCGATCCGGCGTGGAGTCAGAACCCGCTGTACAAACGTTATCTGCAAACCTATCTGGCGTGG CGCAAGGAACTCCATGCCTGGATCGACGACAGCAGTCTCTCGCCCAAGGACATCGCGCGCGGCCACTTCGTGATCAACCTGATGACCGAGGCCATGGCCC CGACCAACACGGCGGCCAACCCTGCGGCGGTCAAACGTTTCTTCGAGACCGGCGGCAAGAGCCTGCTCGACGGCCTCTCGCACCTGGCCAAGGATCTGGT GCACAACGGCGGCATGCCGAGCCAGGTCAACATGGGCGCGTTCGAGGTCGGCAAGAGCCTGGGCGTGACCGAAGGCGCGGTGGTGTTTCGCAACGATGTG CTGGAGCTGATCCAGTACAAGCCGATCACCGAGCAAGTGCACGAGCGCCCGCTGCTCGTCGTGCCGCCGCAGATCAACAAGTTCTATGTATTTGACCTGA GCCCGGACAAGAGCCTGGCGCGTTTCTGCCTGCGCAACAATGTGCAGACCTTCATCGTCAGCTGGCGCAACCCGACCAAGGAACAGCGCGAGTGGGGCCT CTCGACCTACATCGAAGCCCTGAAGGAAGCGGTCGACGTGGTCACCGCGATCACCGGCAGCAAGGACGTCAACATGCTTGGCGCCTGCTCCGGCGGCATC ACCTGTACCGCCCTGCTCGGCCACTATGCCGCCACGGGCGAGAACAAGGTCAATGCCCTGACCCTGCTGGTCAGCGTGCTCGACACCACCCTCGACAGTG ATGTCGCACTGTTCGTCGACGAGCAGACGCTGGAAATGGCCAAGCGACACTCCTATCAGGCCGGCGTGCTCGAAGGCAAAGACATGGCCAAAGTCTTTGC CTGGATGCGTCCCAACGATCTGATCTGGAACTACTGGGTCAACAACTACCTGCTCGGCAACGAGCCGCCGGTGTTCGACATCCTGTTCTGGAACAACGAT ACGACTCGACTGCCGGCCGCGTTCCACGGCGACCTGATCGAGATGTTCAAAAACAACCCACTGATCCGCCCCAATGCACTGGAAGTGTGCGGCACGCCGA TCGACCTCAAGCAGGTGACCGCCGACATCTTCTCGCTGGCCGGCACCAACGACCACATCACGCCGTGGAAGTCCTGCTACAAGTCGGCGCAGCTGTTTGG TGGCAAGGTCGAATTCGTGCTGTCCAGCAGCGGACATATCCAGAGCATCCTGAACCCGCCGGGCAACCCGAAATCGCGCTACATGACCAGCGATGAAATG ACCGCCAATGCCGATGACTGGCAGGAAAACTCGACCAAGCACGCCGACTCCTGGTGGCTGTACTGGCAGGCGTGGCAGGCCGCGCGCTCGGGCGAGCTGA AAAAGGCGCCGACCAAGCTGGGCAACAAGGCGTATCCGGCAGGCGAAGCTTCACCGGGCACTTACGTTCACGAGCGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGACACCCCTCACTCCCTGCGGGGAGTGAGGTGATCACTGAGATTGCGACCCACAGGGCCTTGAAGCATGCCGCACCCGTTCATCTTTCGAACTGTCGA GCTGGATGGCCAGACCATCCGCACGGCGGTCCGCCCCGGCAAGCCTCACTTGACGCCCTTGCTGATATTCAACGGCATCGGCGCCAACCTGGAGCTGGTG TTTCCTTTTGTCGCGGCGCTGGATCCGGATCTGGAAGTGATCGCCTTCGACGTGCCCGGTGTCGGCGGTTCCTCGACGCCGAGCCGGCCGTATCGCTTTC CGGGGCTGGCGAAGCTCACCGCGCGGATGCTCGATTACCTCGACTACGGACAGGTCAACGTGATCGGCGTGTCCTGGGGTGGCGCGCTGGCGCAACAGTT CGCCTACGACTATCCCGAGCGCTGCAAGAAGCTGGTGCTGGCGGCGACCGCTGCCGGTGCGGTGATGGTGCCTGGCAAGCCGAAAGTGCTGTGGATGATG
|
|
| Amino Acid Sequence |
>Poly(R)-hydroxyalkanoic acid synthase, class II
MSNKNNDDLKYQASENTLGLNPVVGLRGKDLLASARMVLTQAIKQPIHSVKHVTQFGLELKNVLFGKSDLQPAGDDRRFVDPAWSQNPLYKRYLQTYLAW RKELHAWIDDSSLSPKDIARGHFVINLMTEAMAPTNTAANPAAVKRFFETGGKSLLDGLSHLAKDLVHNGGMPSQVNMGAFEVGKSLGVTEGAVVFRNDV LELIQYKPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNVQTFIVSWRNPTKEQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAATGENKVNALTLLVSVLDTTLDSDVALFVDEQTLEMAKRHSYQAGVLEGKDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLIRPNALEVCGTPIDLKQVTADIFSLAGTNDHITPWKSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKSRYMTSDEM TANADDWQENSTKHADSWWLYWQAWQAARSGELKKAPTKLGNKAYPAGEASPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|