Pseudomonas aeruginosa 39016, PA39016_003350008
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 39016 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTAGGGATTCCCGCCGACCCCGAGCCCGCGCGTACCGCTGGGCTCTTCGTGCCCTACCTGGGCACCACTGCATTGATCAGCAAGTTCGTCCCGCAGTT GCTTTCACGCGGCAAGGCGCGTGGAGTGTTCTTCCATGCGGTGCGCCTGCCCGATGGTAGCGGTTACAAGGTGATCCTCGAAGCGGCTCCGGCGGACATG TACGACAAGGACCTGGAAGTGTCTGTAGCAGCCATGAGCCGCGAGTTGGCGAAGTATGTACGAGCCTATCCCAGCCAGTACATGTGGAGCATGAAGCGCT TCAAGAACCGCCCGGATGGCGAGAAAAAATGGTACTGAGGAAAGGGCGTCGGAAGACGCCTTTTTCATATCCGGGTACTATGCTCAGCTCTGCCGCCTCC TCCGCAGGTCCCGAGGGACTCGATGGATAATCAACGACAATACCCACGAACCCCGCTCAAGTGCCGAATCCGTATCAGTCACCCGTTATTTGGCGAGCTG
|
|
| DNA Sequence for Gene |
>PA39016_003350008
ATGGCGCAGACACGCGACCTCTCCGACACCGGGGTCTATGTCAAACACCCGGATCTGACCCAGCTCCCAACAGGCAGTGTCGTTACTGGCCAGGTACAGG ATCTGCCGATCGACGCGCCGATCCTGCAGATGGAAGTCGTGCGAGTCGATGCGGAAGGCGTCGGCCTGCGCTTTCTCAGCGAAGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACGGTGATGTTCCACGTGGAACCCCAGGCATGAGCCACTGATCACAGAGTGGGCGAAACCGCTGCCGGTTATCGGCTAGAATGCGCGCCGCTCGGCATGG TGCCGGGCATGGGTTCCCTCACCCCATCGCGCAAAAAGGACAGTACATGTCAGCCTCTTCTCCGGCGGCCTGGCGCGGCACCCTGGCCGGCCTGATCGCC TTCCACATCTTCATCATCATCGCCAGCAACTACCTGGTGCAGTTGCCGATCACCCTGTTTGGCTGGCACACCACCTGGGGCGCCTTCAGCTTTCCGTTCA TCTTCCTGGCAACCGACCTCACCGTGCGCCTGCTGGGCAAGGGCCCTGCCCGGCTGGTCATCGCCCGGGTCATGATCCCGGCGTTGATCGCCTCCTACGT GGTCTCGGTGTTGTTCCAGGAAGCGGCGTTCCGTGGTTTCTCCGCGCTGCTGGAGTTCAACACCTTCGTCGCACGGATCTCCCTGGCAAGCTTCCTCGCC
|
|
| Amino Acid Sequence |
>pilus protein PilZ
MAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|