Pseudomonas aeruginosa 39016, PA39016_001350005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.25.40.10
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | IPR011990 | Tetratricopeptide-like helical domain superfamily | 523 | 602 | 3.8E-6 |
| PANTHER | PTHR48125 | LP07818P1 | - | - | 106 | 556 | 2.8E-9 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 213 | 289 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 245 | 259 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 775 | 797 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 387 | 421 | - |
| Coils | Coil | Coil | - | - | 295 | 343 | - |
| SMART | SM00257 | LysM_2 | IPR018392 | LysM domain | 151 | 206 | 0.0037 |
| NCBIfam | TIGR03504 | JCVI: FimV/HubP C-terminal domain | IPR020011 | Motility protein FimV, C-terminal | 856 | 899 | 6.4E-21 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 356 | 370 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 348 | 421 | - |
| CDD | cd00118 | LysM | IPR018392 | LysM domain | 151 | 205 | 3.16971E-6 |
| Gene3D | G3DSA:1.20.58.2200 | - | IPR038440 | FimV, C-terminal domain superfamily | 839 | 900 | 1.9E-27 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 116 | 153 | - |
| NCBIfam | TIGR03505 | JCVI: FimV/HubP N-terminal domain | IPR020012 | Motility protein FimV, N-terminal | 158 | 230 | 3.9E-30 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | IPR036779 | LysM domain superfamily | 139 | 214 | 1.6E-10 |
| Coils | Coil | Coil | - | - | 462 | 482 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 213 | 235 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.