Pseudomonas aeruginosa 39016, PA39016_001330066

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00038
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 177 189 4.9E-12
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 4 115 5.2E-26
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 147 201 5.2E-21
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 147 161 4.9E-12
CDD cd17535 REC_NarL-like - - 4 119 4.66935E-42
PANTHER PTHR45566 HTH-TYPE TRANSCRIPTIONAL REGULATOR YHJB-RELATED - - 2 200 2.6E-36
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2 114 4.0E-30
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 161 177 4.9E-12
FunFam G3DSA:3.40.50.2300:FF:000267 Virulence factors transcription regulator - - 3 207 3.1E-126
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 2 170 2.85E-30
Gene3D G3DSA:3.40.50.2300 - - - 3 207 5.6E-52
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 147 203 2.33132E-18
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 144 201 1.3E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.