Pseudomonas aeruginosa 39016, PA39016_002660021

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa 39016 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCCTGGCGCTGGCGATCCTGGCGCTGGCCGGCTGCTCGTATTTCTTCGCGCCGCGGGTCGAGTTGCAGCGGCTGACCCTGGATGTCGCCGCGCGCGCCA ACGACGACTCGCCGATCGCCGTGGACTTCGTCGCGGTGAAGGATGCGGAGCTGTTCAAGGAACTGGCCGGACTGCCGGCCAGCCAGTGGTTCGCCAATCG CGAGCAGTACCGTCGCGACTACCGGCAGCAGTTCGCGGTATGGAGCCTGGAGCTGGTCCCAGGGCAGTTCATCGAGTCGGAGTCCTTCCCCTTGCGCGGC GACCGCGCAACTGGACTTTTGGTCTTTGCCGGCTATAACACACCCGGCGCGCACCGCTTGCGCCTCGACCAGCAGCAGCGCGTCTGGCTGCGTCTGGATA CCCGGGAAATGCGACTGGTCAACGATCCCGCCGCGCCCTAGCGAAGGGGCAGGCGAGCGACCGTCGTGCACGACAACGTAGGACGTCGAAGGGGAGTCGT
DNA Sequence for Gene
>PA39016_002660021
ATGAGTGTTCTGCCTGACGCGGTGTGCTGGCACGAAGGGATGCAACTGCTTCCCCAGCATTTCCAGTTGCAGGGATTGCGTGCCGAGGCGCTGGCGGCGC GCACCGGACAGGCCTGCAACCCTTGGTTCTGGGGCGTGACCGCCCTGGAACTGGACCCCTCGGCGTTGTGCGCCGGCCAGGTGCGGGTCCTGCACCTCGA AGCGATCCTGCCCGACGGCCTGCCGGTGAGCGTGCAGGCTGGTGTCGACGCACCGCTGGAGTTCGACCTGGAGACTGCGCTGGCGGCCGCCGAAGGGCCG CTGCTGAACGTCCACCTGGCGGTCAGTCCGCTGTGGCGGGCGGGTCAGTTGCTGCCGCTGAAGGGCCGTCTGCAATCGCGGGTCGGCGCGCCGCTGCCGG ACCTGGCCAGCGGCGAGCACCCCGAGCCGATCACCGTCTGGCGAGCGTCGCTGCGGCTGGTCGGCGACGACGGCAAGGCCGACTCCGTGTGCCTGCCGTT GCTGCGCGTGGCGAAGGAGGGCGGCGCCTATGTCAGCCTGCCCTACGTCCCGCCGACGCCATTGGTGCTGCCGGAGTCGCCCCTGGGCAGGCGCGTGCAG TCGCTCTGCGCGCGGGCCCGGGAGAAGGCGCTGTTCCTCGGCGGGCGCCTGCGCCTGGCGCAGCAGGCGGGTAACCAGGACGACGCCGTGGAAGTCCGTC GCCAGCTCGCCGCGCTCTGGACCCGCCTGCCGGAGGTGGAAGGCCTGCTGGCAAGCCGCGCGGCCTCGCCGCTGGCCCTGCACGGCAGCCTGCTGGGCCT GGCCGGGGCCTGGGCGGCGCTCGATCCGCTGGCCGGCGTGCCGGCCTTCGAAGCGCTCGACTTCCTCGACCTGCGGCGTGGCTACGAGCCGCTGCTGGAC TGGCTGGAGCGCGCCATCGAGTCGATCCGCGCGGGCTACCGCTGCCTGCCGTTCGAGCAGGAGGAACAGGTGTTTTCCGTGCGCCTGCCCGATCCGGCGC CGCGCCAGCGCCTGGTGGTCGGCCTGCGGATGCCCGCCGGCGCCGGCGAACAAGCGGCGGCTGACTGGCTGGAGCGCGCCATCGTCGCCTCCGATCCGCA CCTGCCGTTGCTCGCCCGGCAGCGCATGAGCGGGCTGGCGCGGCAGCCGATGAATCGCCAGGAACAGGTGGCCTACAGCGTCGGCGACGACACCCGTTTG TTCGTCGTGCAGGGCGCCGGCGACTGGTTCGATGCCGGCCAGCCGCTGCGCATCGTCGCGCCGGTCTGCGGGGTTGCCAGCAGTCCCTGGCAGATCGTGC TGTTCGTCGCCGACGGCAGCGACAACACCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACAGGAAGGAGCCGCCAATGCCCGAAGGGAGTGCAGGGCCTTTTTCCCAGGCGTACCAGGAGCAGCCGCTCAGCACGGCATTCCGCCAGGCCTGGCAGGA ATGGCTGGAGGCCTGGGGCGCCCTCGACCGCGACGCCCAGGATGTGCCACGGATGGTCGAGCGCGCCCTCGAACTGTCCACCCGCATTACCCGGCGTCTG TGGCGCAGCGCCTTCGCCAGCGTCGGCGACGCGGCGGGCGTGCAGGTCAAGGCGATGGTCTATGCCTTCGTCGCCCTGGTCGACGAGACCCTGGTCTTCA GCGCCTGGCCGGGGCAGGGCGCCTGGCAGGAAAAACCGCTGGAGTCGCATCTCTACGGCAGTCGCCAGGCGGGCGAATACCTGCCGCTGGCGATCAAGCG CCTGCTCGACGAACGCGCCCCGGCCAGTCGCGACCTGGCCAACGTCTACCTGCAATGCCTGATCCTCGGCTTCCGCGGTCGCCTGCGCGGGCCGCGCGGC
Amino Acid Sequence
>type VI secretion protein
MSVLPDAVCWHEGMQLLPQHFQLQGLRAEALAARTGQACNPWFWGVTALELDPSALCAGQVRVLHLEAILPDGLPVSVQAGVDAPLEFDLETALAAAEGP LLNVHLAVSPLWRAGQLLPLKGRLQSRVGAPLPDLASGEHPEPITVWRASLRLVGDDGKADSVCLPLLRVAKEGGAYVSLPYVPPTPLVLPESPLGRRVQ SLCARAREKALFLGGRLRLAQQAGNQDDAVEVRRQLAALWTRLPEVEGLLASRAASPLALHGSLLGLAGAWAALDPLAGVPAFEALDFLDLRRGYEPLLD WLERAIESIRAGYRCLPFEQEEQVFSVRLPDPAPRQRLVVGLRMPAGAGEQAAADWLERAIVASDPHLPLLARQRMSGLARQPMNRQEQVAYSVGDDTRL FVVQGAGDWFDAGQPLRIVAPVCGVASSPWQIVLFVADGSDNT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site