Pseudomonas aeruginosa 39016, PA39016_000110142

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa 39016 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAAACGCATTCGCCACAGACAACTCGATGGCAACCAACCCTTGAAGCAGACGGATTACAAACAGGTTTCAAGGCATGATTCGTTTGCTTTCAAACAGAAT AGCTTCGCTCTCGAAGAGACCAACTGGAATACATAGGCGAAGCCGTTTTCCAATTTGTGCACGGAGTTTGCTTATACCTCTTTCATCACAGTAAGAGGGG CCGTACGGAACATGACATTTTTATTACAAGACCCCGCCAATCGGGAAAAGCGACTTGAGAAGCGACCTCAACAAGAGTGACCAAGCCCGCGACATACGTC ATTTTTTCAACTGCGCACCTACGCAGATGCGACATACGTCATGCAATTTTGCGACAACGCCGTAAAGAATCCGTCGCTTCGGAACCTCAACTATCGCCAA GAAACACTGCGTGCTATAAGTTAGCGCCGACAAGAAGAACTAGCCGTCACTGCGGCACTGTGATGGCAGAGATAATTTCAAAACCAAAGGAGCAATCACA
DNA Sequence for Gene
>PA39016_000110142
ATGAAAGTGATGAAGTGGAGCGCCATTGCACTGGCGGTTTCCGCAGGTAGCACTCAGTTCGCCGTGGCCGACGCATTCGTCAGCGATCAGGCCGAAGCGA AGGGGTTCATCGAAGACAGCAGCCTCGACCTGCTGCTCCGCAACTACTATTTCAACCGTGACGGCAAGAGCGGCAGCGGGGACCGCGTCGACTGGACCCA AGGCTTCCTCACCACCTATGAATCCGGCTTCACCCAAGGCACCGTGGGCTTCGGCGTCGATGCCTTCGGCTACCTCGGTCTGAAGCTCGACGGCACCTCG GACAAGAGCGGTACCGGCAACCTGCCGGTGATGAACGACGGCACGCCCCGTGACGACTACAGCCGCGCCGGTGGCGCCGTGAAGGTACGCATCTCCAAGA CCATGTTGAAGTGGGGCGAGATGCAGCCGACCGCTCCGGTCTTCGCCGCCGGCGGCAGCCGCCTGTTCCCGCAGACCGCGACCGGCTTCCAACTGCAGAG CAGCGAACTCGAAGGGCTCGATCTCGAAGCGGGCCACTTCACCGAAGGCAAGCAGGGCACCACCACCAAGTCGCGCGGCGAACTCTACGCAACCTATGCA GGCGAGACCGCCAAGAGCGCCGATTTCATTGGGGGCCGCTACGCAATCACCGATAACCTCAGCGCCTCCCTGTACGGTGCTGAACTCGAAGACATCTATC GTCAGTATTACCTGAACAGCAACTACACCATCCCACTGGCATCCGACCAATCGCTGGGCTTCGATTTCAACATCTACCGCACAAACGATGAAGGCAAGGC CAAGGCCGGCGACATCAGCAACACCACTTGGTCCCTGGCGGCAGCCTACACTCTGGATGCGCACACTTTCACCTTGGCCTACCAGAAGGTCCATGGCGAT CAGCCGTTTGATTATATCGGCTTCGGCGAGAACGGTTCCGGCGGCGGCGGTGACTCGATTTTCCTCGCCAACTCCGTGCAGTACTCCGACTTCAACGGCC CCGGCGAGAAATCCTGGCAGGCCCGCTACGACCTGAACCTCGCCTCCTATGGCGTTCCCGGCCTGACTTTCATGGTCCGCTATATCAATGGCAAGGACAT CGATGGCACCAAGATGTCTGACAACAACGTCGGCTATAAGAACTACGGCTACGGCGAGGACGGCAAGCACCACGAGACCAACCTGGAAGCCAAGTACGTG GTCCAGTCCGGTCCGGCCAAGGACCTGTCGTTCCGCATCCGCCAGGCCTGGCACCGCGCCAACGCCGACCAGGCCGAAGGCGACCAGAACGAGTTCCGCC TGATCGTCGACTATCCGCTGTCGATCCTGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGACCGACAGGCAACGAAAAAACCCGGCATCGCCGGGTTTTTTCTTCTCGGCGGCAACGCGCCTATAAAGGAAGGGCGTAGGTACCGGTCACATGGGCC ACCAGGTCTTCCTCATTACTCTGCGAAAACACCCCGACCTCGCAGACGACCTGGCGCCGCCCCAGCTTGAGGATGCTCGCCTCGGCCAACAGGTCCTCGG GCCTGGGCTTGCTGAGGAAGTTGATGTTCAGGTTCGAGGTCACGGCCATCTCGACCGCCCCGAGACGCCCGAGAATGACCGCGTACATCGCCGCGTCGGC CAGCGCCATGATGGTCGGGCCGGACAACGTTCCACCGGGACGCACCAGCTTGCCGTGAAAAGGTATGCGCGCCAGCGCATGTCGTTCGTCGAGACGCTCG ACACGAAAATCGATGTCCTCGGCCATGGGCAGCCCCATGCGGATCAACGCCTGTACCTGCGCCGCGTTCATTGCCTGCTGACTCCTCATCATCGATGGCC
Amino Acid Sequence
>porin
MKVMKWSAIALAVSAGSTQFAVADAFVSDQAEAKGFIEDSSLDLLLRNYYFNRDGKSGSGDRVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGTS DKSGTGNLPVMNDGTPRDDYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSELEGLDLEAGHFTEGKQGTTTKSRGELYATYA GETAKSADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGD QPFDYIGFGENGSGGGGDSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYV VQSGPAKDLSFRIRQAWHRANADQAEGDQNEFRLIVDYPLSIL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site