Pseudomonas stutzeri KOS6, B597_017050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri KOS6 scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCGACCCGAAGCGAATCGTTCTCGCCGGCTTCTCCCAGGGCGGCGCGGTCGTTCTGCATACGGCCTTTCTCCGCTGGCAGGGACCGCTAGGCGGCGTC ATCGCCCTGTCGACGTACGCACCGACATTCACCGAGCCGTCGGCCATTTTCACCCAGGCACTCGGCTATCCGACACTGTGCCTGCATGGCAGCCGCGACG ATGTGGTGCCGGCGGCAATGGGTCGTGCGGCCTACCAGTGCTTGCGCGACGCCGGCGTTGACGCGACGTGGCGCGAATACCCCATGAGCCATGAAGTGTT ACCGGAGGAGATCCGCGACATCGCCGACTGGCTCGCGCCGCTGCTTGCCCGATAGGGGCGCGCACCTCATCGCCAGCGGGTCGCACAGCTCGCTGGCTGG CGCCGCAACGCCAGACGTAACCGAGCGCGAGACTTCGCCATACCGGCGTCTTGCATTACACTGACGCGCGATTCTTTCCTAATTCGACGACGAGAAGACC
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| DNA Sequence for Gene |
>B597_017050
GTGCTCAAAGCACTCAAGAAAATCTTTGGCAAGGCCCCCGACAAGCAGGCCGACGTAGTGGCCAGCGCCGGGCCTGCCGGTGACGAGACGCCACCACATA ACCCCCCGGCCCGACAAAACGCCGAGGCCGCCGAGCGCCTCCCCACGCAGCAACCCGCGCCACGCTCCAGTGAAAAGCCACGACGCCCGCGTAACAACAA GCCGGCAAGGCCCGCTGCGCCCGCCTGGAAACTGGAAGACTTCGTGGTCGAGCCGGCCGAAGGCAAGACCCGCTTCCACGACTTCAAGCTCGCCCCCGAG CTGATGCATGCGATCCACGACCTGGGATTCCCCTACTGCACGCCGATCCAGGCCCAGGTGCTCGGCTACACGCTGGCCGGCAGAGACGCCATCGGTCGCG CCCAGACCGGCACGGGCAAGACGGCTGCCTTTCTCATCTCCACCATCACTCAGTTGCTCCAGACGCCGCCGCCCAAGGATCGCTACATGGGCGAGCCACG CGCACTGATCATCGCCCCTACCCGCGAACTGGTGGTGCAGATCGCCAACGACGCGCTGGACCTGACCAAGTACACCGGGCTGAATGTGATGAGCTTCGTC GGCGGCATGGACTTCGACAAGCAGCTCAAGCTGCTGGAATCGAAGTACTGCGACATTCTGGTTGCCACGCCCGGGCGCCTGCTGGATTTCAACCAGCGTG GCGAGGTGCACCTGGACATGGTCGAGGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATTCCGCAGGTCCGCCAGATCATCCGACA GACACCACCCAAGAGCGAACGTCAGACCCTGCTGTTCTCCGCCACCTTCACCGACGACGTGATGAACCTGGCGCAGCAGTGGACGACCAATCCCGCGGTA GTCGAAATCGAGCCGGAGAACGTGGCCAGCGACACCGTCGAGCAGCATGTCTACGCCGTGGCCGGCAGCGACAAGTACAAGCTGTTGTACAACCTGATCA CCCAGAACGACTGGACGCGGGTAATGGTCTTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAAGAGCGCCTGACCCGCGACGGCATCAGTGCTGCGCA GATGTCCGGCGACGTACCGCAGCACAAGCGTATCCGCACGTTGGAAGGCTTTCGTGAAGGCAAGATCCGCGTACTGGTGGCCACCGACGTCGCCGGTCGA GGCATTCACGTCGATGGCATCAGCCATGTGATCAATTTCACCCTGCCGGAAGATCCCGACGATTACGTGCACCGCATCGGCCGCACCGGCCGTGCCGGCA CCAGCGGCACGTCAATCAGCTTCGCCGGCGAAGACGACTCCTTTGCGCTGCCGCCCATCGAGGCACTGATCGGCCGCAAGATACAGTGCGAAATGCCGCC GGCAGAACTGCTCACCCCGGTACCCCAAGCACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCCTCCGGCGTGACCTCGGCGCGCCGTATTCCTGATCCACTGCCTGACTCGATGATCTGAGTCAGGCGGCGATCATCGTCGGGCGGCTAGAGTTGTAC CCGGAATCAGGATCGAGGAGGCACCGATGGACAGCATTCACTGGCTTCTGACGCTCATCGTCATCGGTTTCGTCATGCTCTGCGTGGGTTTCAACTACCG GGATACGCAATGGGGCGTCGGCCTGCTGAGCTTGGGCGTGCTGACCATGTTCTCGACGCTGGCCTTCAAGATCTACATCACCTTCCCCTGAAGGCTCAGC CTTCCTCGCGCCAGCGTTCGGCCGCCAGCTGATCGCTGGCGCGACCCTCTACCCAGCGCGGTCCCGACGTGGTGTTCTCCTTCTTCCAGAACGGCGCCCG CGTTTTCAGGTAATCCATCACGAAACGACAGGCGTCGAAGGCCGCATCGCGATGGGCACTGGCGGCACCGACGAAAACGATGGGTTCGCCAGGCTCCAGC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MLKALKKIFGKAPDKQADVVASAGPAGDETPPHNPPARQNAEAAERLPTQQPAPRSSEKPRRPRNNKPARPAAPAWKLEDFVVEPAEGKTRFHDFKLAPE LMHAIHDLGFPYCTPIQAQVLGYTLAGRDAIGRAQTGTGKTAAFLISTITQLLQTPPPKDRYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFV GGMDFDKQLKLLESKYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAQQWTTNPAV VEIEPENVASDTVEQHVYAVAGSDKYKLLYNLITQNDWTRVMVFANRKDEVRRIEERLTRDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGR GIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDSFALPPIEALIGRKIQCEMPPAELLTPVPQAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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