Pseudomonas stutzeri KOS6, B597_011940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri KOS6 scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGAAAATGGGCGGCATGTACTTCAGCGTCTCCGACCCGATCCGCAAGCAGAACGAAGATGCCCTGCTCAAGGATGCCGTCGCCGCCTTCCAGGCTCGGG CACAGCTGGCGACCGAGGCGCTCGGCGGCAGCGGCTACAAGCTGGTGAGCCTCAACCTCAACGGCGGAGGATTGCAGCCGGTCATGCGCAGCAGCGCGAT GAAGATGGACATGATGGAGTCGGCACCCATCCCCGAAATCGAGGCGGGCAGCCGCCAGGTCACGGTCAGCGCCGATGGTGTCATCGAAGTGCAGATGCCG TAGCTGGATCACGATCGAGCGGCAAGCACACGCCCCGCTCGATCGATAAATATTTCCTTACAATCGCAGAACCCCGACGGCAGTAAGGCTGCCACCCTGT TCAACCCATGCAAATGAGAAATTATCGCGAACAAACGTAAATTCTTATTTAAGAATAATTATCATGCGAGCCTTGACGAGACGGCACACAAGGAGCCCGC
|
|
| DNA Sequence for Gene |
>B597_011940
ATGCCCATTCCCTTCGCACGAACCACCCTGTCCTGCGCCCTGATTGGCTGCAGCCTGACGGCCTACGCCCAGACCGAACCGGTCACGCTCAACGACACGG TCGTCAGTGCCTCCGGCTTCGAACAAAAGATCACCGAAGCGCCAGCGAGCATCAGCGTGATCAGCCAGGAGGACTTGCAGCAGAAGCGCTACAACAACCT GGCGCAGGCCCTGGGCGACGTGGAAGGCATCGACATCGGCCAGAGTACGGGCAAGACCGGCGGACTGAATATCAGCATTCGCGGCATGCCCAGTGAATAC ACTCTGATCCTGATCGACGGTCGCCGGCAGAACGCCGCGGGCAACGTCACCCCCAACGGCTTCAACGAAACGTCCACCAGCTTCATGCCGCCGCTGTCCG CCATCGAACGCATCGAAGTGATCCGCGGCCCGATGTCGACGCTTTATGGCTCCGATGCGATGGGTGGAGTGATCAACATCATCACCCGCAAGGTAGCCAA GGAATGGACCGGCTCGCTGACTCAGGACTACACCTATCAGCAAGACCGTGACTTCGGCGATACCCGCAATACCGGCGTCTACGCCAGCGGGCCGCTGGTC GACGGGCTGCTTGGCCTGCAGGTGCGCGGCAGCCTGTTCGATCGAGAAGAGTCCGACCTGAGCTATGGCAACGGGGTGGATGTGAGCAAGCGCGGGCCTT CACCAGTGGATGGCCGCAATCACAATCTCGGCGCCCGTCTCACCCTGACACCGCATGACGACCACGATTTCGCACTGGACCTCGAGCGCGGCCGGCAAGC CTACAACAACGACGCCTGCCAGCTCGGCACCCTGGACGGCCTGAACAGGGCCTGCAGCGCACCGGACACTGCCGCAAATGGCTATGCCGACGAGCTTCGC TTCGAGCGCGAACAGATCGCGCTCACCCATACCGGTCGACTGGGATTCGGCACGCTCGAATCCAGCCTGATGCACAACACCACCGAAACCATCGGCCGCA CGATTCCCGGCACCATCGGCGCGCCGACCGCCGTATCTGGCGCAGTCGGCGGAGACGATCGCGAGCTGGAAACCACGAACCTGGTCCTCGACACTAAACT GGTTGCCCCGATCGGCGAGTCGCATATCGCCACCGTAGGCGGCCAATGGTGGAAAGCCGAGATGACCGATGGCATCGCCCAAACGGAATTCGAGCAGAAA ACCTGGGCACTGTTTGCCGAGGACGAGTGGCGTCTGCGCGACGACCTGGCGCTAACCCTCGGTGCCCGCTACGACGACCACGAGTCCTTCGGCGGGCACG TCAGCCCGCGGGCTTACCTGGTCTGGAACACCACCGACAACTGGACCCTCAAGGGCGGCATCAGCAAAGGCTACAAGACGCCGGACCTGAACGACCTGCA CGGCGGCATCAATGGCGTAACCGGCCAGGGCACCATCATCACCATCGGCAACCCCGACCTGGACCCCGAGACAACCACCAGCACGGAGATCGGCGCCTAT TTCGACAGCCTGACCGGCTACAGCGCCAACGCCACGCTGTTCCACAACAAGTTCAAGGACAAGATCGCCAGCGGCGATCCGATTACCGACCCGCTGTGCG CGGGTAACAGCGGCGGGACCTGTTCGCAGCAGATCAATGTCGACGAAGCGGTAACCCAGGGGCTGGAGCTGGGCGGCAGCTGGCAGTTCGCTCCAGCCTG GAAGCTGAGCGCCAACTACACCTACACCGATAGCGAGCAGAAGAGTGGCGACAACAAGGGTGAGCCGCTGACCAACACGCCCGAACACTTGGCCAATGCC AAGCTCGACTGGCAGACTACCGACCGTCTGGGCCTGTGGCTGAGGGGCGAGTATCGCGGTGAGCGCGCGCGCTTCACCTCCAGCTATGCCAACCTCGCTA ATGCTGATGGCAGCTACTCCACCAGCCAGTCGATCTACGACACGTTGGGCAAGAACGCCAAGGCATACACCCTGTTCCACCTTGGCGGGTCATATCGGGC CACGGAAAACCTGACGTTCAATGCGACGATCTACAACCTGTTCGACAAGGACTTTGTTGACGGCAAGGCCTACACCACCTATTCCGCTCCTCGTTATAAC AACGCCGGTGTCCTCATCACTCCCGGCGGCGCACCTGGCGCCCCTGCCTACGGCACCGACTTCAGCCACTCCGGGGCGGCCACTACCGGTATTGTGGAGG AAGGCCGCCGCCTCTGGCTGTCCGCCAACCTGACCTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGAAGGCGACACAACGAGCCGGGACCATCCCGGCTCTGTTGTTCTCGCCTACACAGAAAATGAAAGACGCGAATGTATGCTATTTGTAAATCTTTAGC ATCGCCACGTCAGTCGACCTAGAATTCGTCCACCTTCCCGCACGACAAGGACCACCATGCACTTCTGGCTCGGCACCCTGCGCCAATGGCACTGGATCAG CTCCGCGCTTTGCCTGGTTGGCATGCTGCTGTTCGCCGTCACCGGCATCACGCTGAACCACGCCGGGCAGATCGAGAGCAAACCGCTGGTGGAAACCCGC GAAGGGCAATTGCCCGAGCGGCTGCTCAGCAGTCTGCAAGCCGATACGCCAGAGGCCGGCTTGCCGGCTGATCTGCGGCAATGGCTGGAACAGACCCTGG ACCTGCAACTGGACGGCCGTGAGGTCGAGTGGAGCGATGGCGAACTCTATGTCGCCCTGCCCCGTCCCGGCGGCGACGCCTGGCTCAGCCTGAGCCTGGA
|
|
| Amino Acid Sequence |
>putative outer membrane receptor
MPIPFARTTLSCALIGCSLTAYAQTEPVTLNDTVVSASGFEQKITEAPASISVISQEDLQQKRYNNLAQALGDVEGIDIGQSTGKTGGLNISIRGMPSEY TLILIDGRRQNAAGNVTPNGFNETSTSFMPPLSAIERIEVIRGPMSTLYGSDAMGGVINIITRKVAKEWTGSLTQDYTYQQDRDFGDTRNTGVYASGPLV DGLLGLQVRGSLFDREESDLSYGNGVDVSKRGPSPVDGRNHNLGARLTLTPHDDHDFALDLERGRQAYNNDACQLGTLDGLNRACSAPDTAANGYADELR FEREQIALTHTGRLGFGTLESSLMHNTTETIGRTIPGTIGAPTAVSGAVGGDDRELETTNLVLDTKLVAPIGESHIATVGGQWWKAEMTDGIAQTEFEQK TWALFAEDEWRLRDDLALTLGARYDDHESFGGHVSPRAYLVWNTTDNWTLKGGISKGYKTPDLNDLHGGINGVTGQGTIITIGNPDLDPETTTSTEIGAY FDSLTGYSANATLFHNKFKDKIASGDPITDPLCAGNSGGTCSQQINVDEAVTQGLELGGSWQFAPAWKLSANYTYTDSEQKSGDNKGEPLTNTPEHLANA KLDWQTTDRLGLWLRGEYRGERARFTSSYANLANADGSYSTSQSIYDTLGKNAKAYTLFHLGGSYRATENLTFNATIYNLFDKDFVDGKAYTTYSAPRYN NAGVLITPGGAPGAPAYGTDFSHSGAATTGIVEEGRRLWLSANLTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|