Pseudomonas stutzeri KOS6, B597_012725 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri KOS6 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGATGTAAATGCGGCGATATGTCCACTGAGCGGATTAACTCCGGCAACGCTCTGCAACGCCTTTGCAGGCGGTGCCGTTTGTCGGAGCCGCCGATGCAC CGCAAGTCTCGCCAGCTGAACTCGTATCAGCGGGGGATGACCAAATGAAGTACGCAACCCTTCGCGGAGATCTGACATGAACAGGCTATTGCTGACGGCC ATCCTGAGTGCCTTGATGACGACATCCGCCATGGCGCAGTTTCCGGCCGGCACCCCCAGGGACGATACGGGTTCGCGGCCCAGTCCGATGGGCAATCCAA CCCCGCAGGAAGAGGTTGAGACGCGCAAGGATCACAAGGGACGCACAGTCACCGAGGATGGACGTCCAGTCGCGCCACCGATGAACGGTGAGTCGTCGAC CGATCCAACCCGCCATTCCGCGCCGGGTGGTCCCAACGATCCCTCCACGGACGCCGGCAAGCTGGAATAACCGCAAGGCATCGTCCGCTGGAGACCAGCC
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| DNA Sequence for Gene |
>B597_012725
|ligD
ATGGCCCTCGACGAATACCAGCGCATACGCGATTTTGCCGCGACCCCGGAGCCGGCAGGCAAGGGGCACGGCAAGCGACGCGGCAAGACCGAGGCGCTGC AGTACTGCATCCAGAAACACGACGCCACGCGCCTGCATTACGACTTCCGGCTGGAACTGGACGGCACGCTGAAAAGCTGGGCCATTCCCAAGGGGCCGAG CCTGGACCCGGGCGTGCGCCGGCTGGCGGTGCACGTGGAAGACCATCCGCTGGAATACGCGAGTTTCGAAGGCAGCATTCCCGCGGGGCATTATGGCGCC GGAGACGTGATCGTCTGGGATCGTGGCATCTGGATACCGCAAGGCGACCCGCATGACGGCTACCGCAAGGGCAAACTCAAGTTCAGGCTCGAGGGCGAGA AGCTCGCCGGCAGCTGGAATCTGGTGCGTACGCACCTGGATGGCAAGAAGGAACAGTGGTTCCTGATCAAGTCCCGCGACGAGGCCGCGCGCGCGGAGGA TGACTACGACATCGTTGCTGCCGAGCCCGACAGCGTGCTCAGCGACCGCACGCTTGTACCACGCAAGCGCGGCACGGCCAGGCAGCGCATCGCTGAAGCG CCCGCCGAGGCGGTCAAGGCACCTGCCAGCAGTCCGCCCCGCGAGCGGCCTTCGACGCTGGTGCTGGAGGGGGCCGCTCCCGCGGAGTTGCCGGACAGCC TCAAGCCTCAGCTGGCCACGCTGGTCGACTCGGTGCCGCCGGGTGACTGGCACTACGAAATCAAGTTCGACGGCTATCGCATGCTCGCGCGTATCCAGGC AGGCAAGGTCAGGCTGTTCACCCGCAACGGCCATGACTGGACCGCGAAGATGCCGCAGCAAGCGGCGGCCCTGGCCGGGCTGGGGCTGGAATCCGGCTGG CTGGATGGCGAAATGGTGGTACCGAACGAGGAGGGCACGCCGGATTTCCAGGCCCTGCAGAACGCCTTCGAGGCGGGACGCAGCGGCAACATCCTCTACT ACCTGTTCGACATGCCATACCTGAACGGCATGGACCTTCGTGCGGCACCGCTCGAGCAGCGGCGTGCAGCACTGCGTGAGGTACTGGAGCACGGTGACAG CGAACTGCTGCGCTTTTCCGAAGACTTCACCGAGCAGCCCGACAGCATTCTCGAGAGCGCCTGCCAGATGAAGCTCGAAGGCCTGATCGGCAAGCGCGCC GGCAGTACCTACAGCTCCCGGCGCAGCAGCAGCTGGGTCAAGATCAAATGCAGCAATCGCCAGGAATTTATCATCGTCGGCTACACCCAGCCCAAGGGCA CGCGCGCGGGTTTCGGCGCGCTGCTGCTGGGGCTGCACGACGAGGCAGGCACGCTGCGCTACGCCGGCAAGGTCGGCACCGGCTTCAATCACGCCACGCT GCAAAGTCTACATAAGCAGTTGAAGCAGCTGGAGAGCGACCACAGCCCGCTAGCCAAGGCACCACCAGCGGCCGATGCACGCGGCGCGCAATGGCTGCGG CCCGAGCTGATGTGTGAAGTCGGCTATGCCGAAATGACCCGTCAGGGTGTCGTTCGCCATTCGGTGTTCCACGGCCTGCGTTCGGACAAGCCGGCCCAGG CCATCACCCATGAGCGCGCCGAAGCGGTCGGCGGCCAAGGCAAAGCGCCCGCTGGACGTGCCGGCACCTCCGTTGGCGACGGCCGGATCAGGATTTCCAA TCCCGAACGGGTCATCGACCCCAACAGCGGCACGACCAAGATCGAACTGGCCCGTTTCTACGCGCAGATCGCGCCTTGGGCGCTGCCACAGCTGCAAGCA CGTCCACTGGCGCTGGTGCGCGCACCGGAAGGCATCGATGGCGAGCTGTTCTTCCAGAAACACGCCGACAAGCTGGCCATACCGCATATCACCCAACTTG ATCCGGCGCTCGACCCGAAGCATGGCGCCCTGCTGGTCATCGACAGCGTCGAGGCACTGATCGGCGCCGCGCAAATGGGCACCATCGAACTGCATAGCTG GAACGCCGTGGCGCCCGATCTGGAGCACCCGGACCGTTTTGTCCTGGACCTGGACCCGGACCCGGCGCTGCCCTGGAAACGCATGATCGAGGCGACCCAG CTGACCCAGACCCTGCTGGACGAGATCGGTCTGGCATCCTTTCTCAAGACCAGCGGCGGCAAAGGGCTGCATATCGTCGTGCCGCTCGAGCCGGTCCATG ACTGGGCCGAGGTCAAGCGCTTCAGCCAGGCCATCGCCAGGTACCTGGCGAAGTTGCTGCCGACGCATTTCTCGGCGGTCAGCGGGCCGAAGAACCGGGT AGGCCGCATCTTCATCGACTACCTGCGCAACAGCCGCGGCGCCAGCACGGTGGCGGCCTATTCGGTGCGTGCGCGAGAAGGGCTGCCGGTTTCGGTACCG GTCCACCGCGACGGGCTTTCCGAACTCCGGGGCGCCAACCAGTGGACGGTTGCCAATCTGCTCGATCATCTGCGCGAACAGGGCGCTGACGACCCCTGGG CGGATATCGGCCAGACGAAACAGGTCATCAGCGCCCTGATGCGCGAGCGGCTGGGGCTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTCTGTATGAAAAGTCGTCGAGCGAAGGTCAGGCGAGGCAAAAACGGGTGAGGAAGCGGAGTTTACGTGCTGTAAATGAGCATTCCGAACCCGTTTTTA ACGAAGCATCACCGAGCGCAGGCACTTTTCGTACAGAGCCTAGGTCGTAACCGATCGAGGGCGCCACGTGCCAGCGAACCGGCCGAACGCCATAACCGTC GCCCGACCAACTGCTGGCAGCCTGTTCCTCTAGCGCTTGCTCAGTGACGTCAGCCTGGCCGTCATGCCGCTGGCGGATAGAAACTCGAACGTCACCTCAT CGCCGATCTCGACCTGCGCAAGTTGCTCGGTACTGGCCTTGAAGGGCATGACCATCGCCGGCCATTGCAGGGACTCCACTGGCCCGTGAGCAATCGTGAT GTAGCCCCGGTCCGGGTCGATCTTCTTCACCGTGCCGGTGGCGCTGGCGGTCTGCGCCGCCTGCTCGTGCTGCATCTGGCTGTGGTTCATGCTCGAGTGG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MALDEYQRIRDFAATPEPAGKGHGKRRGKTEALQYCIQKHDATRLHYDFRLELDGTLKSWAIPKGPSLDPGVRRLAVHVEDHPLEYASFEGSIPAGHYGA GDVIVWDRGIWIPQGDPHDGYRKGKLKFRLEGEKLAGSWNLVRTHLDGKKEQWFLIKSRDEAARAEDDYDIVAAEPDSVLSDRTLVPRKRGTARQRIAEA PAEAVKAPASSPPRERPSTLVLEGAAPAELPDSLKPQLATLVDSVPPGDWHYEIKFDGYRMLARIQAGKVRLFTRNGHDWTAKMPQQAAALAGLGLESGW LDGEMVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDMPYLNGMDLRAAPLEQRRAALREVLEHGDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRA GSTYSSRRSSSWVKIKCSNRQEFIIVGYTQPKGTRAGFGALLLGLHDEAGTLRYAGKVGTGFNHATLQSLHKQLKQLESDHSPLAKAPPAADARGAQWLR PELMCEVGYAEMTRQGVVRHSVFHGLRSDKPAQAITHERAEAVGGQGKAPAGRAGTSVGDGRIRISNPERVIDPNSGTTKIELARFYAQIAPWALPQLQA RPLALVRAPEGIDGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSVEALIGAAQMGTIELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMIEATQ LTQTLLDEIGLASFLKTSGGKGLHIVVPLEPVHDWAEVKRFSQAIARYLAKLLPTHFSAVSGPKNRVGRIFIDYLRNSRGASTVAAYSVRAREGLPVSVP VHRDGLSELRGANQWTVANLLDHLREQGADDPWADIGQTKQVISALMRERLGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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