Strain | Pseudomonas stutzeri KOS6 scaffold1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCGGCAGCAGGCAGGTTCGGCGACGCCGGAGTTGAGCATCGATATCCTCGGCAGCGACGGCAAGCCGCTGGGCATGCATGGGCGCATCCTGTTCTCCGGC ATCGAGGTGGATGCCGGCACCGGCGACGTGCTGCTGCGCGTACTGGTGGACAACCCGCAGCGCCGTCTGCTGCCTGGCCTTTACGTGCAGGCACGGATTC CCCGTGCGCATTACCCCGCCGCCCTCAGCGTGCCGCAGCAGGCGGTGACCCGCACGGCAGGTCAGGCCAGCGTGTGGCTGGTGGATGCCCAGGGCCAGGT GCAGCCGGTGTCGATCGAGGTCGGTGAGCTGGTCGAAGGCCGTTACCGTGTGGTGTCCGGACTCAGCGCCGGGCAGCAGGTGGTGATCGAGGGTATCGAG CGCCTGAGCCCCGCCGCCCAAGTCGCCACGCGCCCCTGGCAGCCCGCCGCCCCCCGCGAACGCCTCAGCGCCGCCGCGCGCTGACTCCGGGGAAGCCCTC
|
|
DNA Sequence for Gene |
>B597_007635
ATGCCGCAGTTCTTTATCAACCGTCCGGTGTTTGCCTGGGTCATCGCCCTGTTCATCGTGCTGGTCGGCGTCATCGCCATCCCGCAGTTGCCCATTGCCC GCTACCCCTCGGTGGCGCCGCCGTCGGTGACCATCTATGCCGCCTATCCGGGGGCCTCCCCGCAGACGCTCAACGACTCGGTGGTAAGCCTGGTCGAGCG TGAGCTATCGGGGGTGAAGAACCTGTTGTACTTCGAGTCCTCGGTGGACACCTCGGGCACCGCGCAGATCACCGCCACCTTCAAGCCGGGCACCGATGCG GAGCTGGCCCAGGTGGACGTACAGAACCGCATCAAGGCGGTCGAGCCACGCCTGCCCCAGGCCGTGCGGCAAAGCGGCCTGCAGGTGGAGTCTGCCGCCT CGGGCTTTCTGATGATGGTCGGCCTGACGTCACCCAACGGCCAGTTCGATGAAGTCGCACTGAATGACTACCTGGCGCGCAACATCGTTCAGGAGTTGCG CCGCATCGAAGGCGTCGGGCGCGTGCAGCTGTTTGGCGCCGAGCAGGCCATGCGCGTCTGGGTCGACCCGAACAAGCTCACCGCCTATGGCCTGACCATG AATGAACTGGCCCAGGCCATTGAGCAGCAGAACGCGTCGATTGCCCCCGGGCGGATCGGCGACGAGCCGGCGCTGCCAGGCCAGCGCCTGACCGTGCCGC TGACCGTGCAGGGCCAACTGAGCACGCCGGAGCAGTTCGCCGCCATCGTCCTGCGTGCCGCTGCCGATGGCGCCAGGGTGGTGCTCGGCGACGTGGCGCG GGTCGAGCTGGGCGCGCAGTCCTACGGTTTCTCCAACCGCGAGAACGGCGTGGCGGCGACCAGTGCCGCCATCCAGCTGTCGCCCGGCGCCAATGCCGTG CGCACCGCATCAAAGGTGCGCGAGCGCCTGGCCGAGCTGGCGCCGAGCATGCCGGCCGGCATGGCCTACTCGGTGCCGTTCGACACCGCGCCCTTCGTCA AGGTGTCCATCGAGAAGGTGATCTACACCCTGTTCGAGGCCATGGCGCTGGTGTTTCTGGTGATGTTCCTGTTCCTGCAGAACCTGCGCTACACGCTGAT CCCGGCCATCGTCGCGCCCATCGCGCTGCTCGGCACTTTCGCGGTGATGCTGCTGGCCGGTTTCTCGATCAACTCGCTGACCATGTTCGGCATGGTGCTG GCCATCGGCATCATCGTCGACGACGCCATCGTGGTGGTGGAGAACGTCGAGCGGCTGATGGCCACGCAAGGGCTGTCGCCGAAAGAGGCGACCCGGCAGG CGATGCGGGAAATCACCGGCGCGGTGATCGGCATCACCCTGGTACTCACCGCCGTGTTCATCCCCATGGCCTTCGGCAGTGGCTCGGTGGGGGTGATCTA CCAGCAGTTCACCCTGTCGATGGCGGTGTCGATCCTGTTCTCGGCCTTCCTCGCCCTGAGCCTGACGCCGGCGCTGTGCGCCACGTTGCTGCGCCCGGTT AGCGCCGGGCACCATGACAAACGCGGCTTCTTCGGTGCCTTCAACCGGGGCTTCGAGCGCCTCACGGCGAGCTATGGGGCGCGGGTGGCGCGCCTGGCCG GGCGCAGCGGACGAATGATGGCGGCCTTCGCCGTGCTCTGCGCGGTACTGGCCGTCGCTGCCGCGCAGTTGCCGTCGGCTTTTTTGCCCGAGGAGGACCA GGGCTACTTCATGACCTCCATCCAGCTGCCCACCGGCGCTACCAGCGAGCGCACGCTGGACGTGGTCAAGGCCTACGAGGCGCACGTGGCCTCGCGTCCG GGGCTGGATGCCAACCTGGTGGTGTTGGGCTTCAGTTTCGCCGGTTCCGGCCCCAACGCGGCCATGGCCTTCACCATGCTCAAGGACTGGGATCAGCGCG ATGGCGCCACCGCCGCCGAAGAAGCCGAGCTGGCGCAGCAGGCCATGGCGGACAACGTCGAGGGCACGGTGATGAGCATGATGCCGCCGGCCATCGACGA GCTGGGCACATCCTCGGGCTTCACCCTGTTCCTGCAGGACCGCGCCAACCGGGGCGAGGCCGCCTTGCTGGCGGCGCAGGCGCAACTGCTGGAGCTGGCG GCGCAGAGTGAGGTGGTCAGCGATGTCTACCCCGATGGCCTGCCGCCCGGCGAGAGCATCCGCCTGGAGATCGACCGGCAGAAGGCCGAGGCCATGGGCC TGTCCTTCGCGGCGGTGAGCAGCACGCTGTCGGCGGCCATGGGCTCTCTGTACGTCAACGACTTCCCCAATGCCGGGCGCATGCAGCAGGTCATCCTGCA GGCCGACGCCTCGGCACGCATGCAACTGGACGACGTGCTCGGCTTGCGCGTGCGCAATGCCAGCGGCGGCATGGTGGCGCTGCGTGAGGTGGTAACGCCG GTATGGAGCGAGTCGCCGCAGCAGATGATGCGCTTCCAGGGCTTTCCCGCCGTGCGTATCGCCGGTGGCGCGGCGGCTGGCGTGTCCAGCGGCGCGGCGA TGGCCGAGATGGAGCGCCTGGTGGCGCAGTTGCCGCAGGGCTTCGCCCTGGCCTGGACCGGGCAGTCTCTGCAAGAGCAACAGTCGGCGGCGCAGGCGCC CTTGCTGATGCTGCTCTCGGCGCTGGTGGTGTTCCTGGTGCTGGCGGCGCTCTATGAGAGCTGGTCGATCCCGCTGTCGGTGATGCTGGTGGTGCCGCTG GGCCTGCTCGGTGCGGTAGCCGCTGTGATGCTGCGCGGCATGCCCAACGACCTGTTCTTCAAGGTGGGGATGATCACCATCATCGGCCTGTCGGCGAAGA ACGCCATTCTCATCGTCGAGTTCGCCCGCCAGTTGCATGGCGAGGGGCGCACGCTGGTCAATGCTGCCGTGACCGCCGCGCGCCTGCGCCTGCGGCCGAT CCTGATGACCTCGCTGGCCTTCACCCTCGGCGTGGTGCCGCTGATGCTCGCCAGCGGTGCCAGCGCCGAAACCCAGCACGCCATCGGCACCGGGGTGTTC GGCGGCATGCTCAGTGGCACCCTGCTGGCGGTGTTCTTCGTGCCGGCCTTTTTTGTGTTCGTGATTGGCACGCAGGAGCGCTTGAGCGCCTGGCGTGCTC GACGTGGCACTGCTGCGCTGCCCCAGGAGAACCCGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TGCGCTTGTATCTGACCTTGCCGCTGCTCGCCTGCCTGAGCGCCTGCTCGTTGACGCCGACCCTGGAGCGCCCGGCTGCGCCCGTGCCGGCGAGCTTTCC CATGGCTGCTGCCGCACCGGCCTCGACGCTGCCGGCCAGTGCCCTGGGCTGGCGCGCGATGTTCGGCGACCCGCGCCTGCAACGGCTGATCGATCTTGCA CTGGCCAATAACCGCGACCTGCGCCTGGCCACCCTCAATGTCGAGGCGGCGCAGGCGCAAGCCAACATCCAGCGCGCCGCGCGACTGCCGGCCGTGGGGC TGGAAGGAACGCGCACGCGTGAGCGCGCCCTGAGCACCGATACCAGCGGCCAGGTCAGCCGTGAGGTGAGCCAGCAGAGCGGGGTGAACGTTGCCCTCAG CGCCTTCGAGCTGGACCTGTTCGGCCGTGTGCGCGCGCTCTCCGATGCGGCATTCGCGCGCTACCTGGCCAGCGAGCAGGGCCGCGACGCGGCGCAGATC
|
|
Amino Acid Sequence |
>multidrug transporter
MPQFFINRPVFAWVIALFIVLVGVIAIPQLPIARYPSVAPPSVTIYAAYPGASPQTLNDSVVSLVERELSGVKNLLYFESSVDTSGTAQITATFKPGTDA ELAQVDVQNRIKAVEPRLPQAVRQSGLQVESAASGFLMMVGLTSPNGQFDEVALNDYLARNIVQELRRIEGVGRVQLFGAEQAMRVWVDPNKLTAYGLTM NELAQAIEQQNASIAPGRIGDEPALPGQRLTVPLTVQGQLSTPEQFAAIVLRAAADGARVVLGDVARVELGAQSYGFSNRENGVAATSAAIQLSPGANAV RTASKVRERLAELAPSMPAGMAYSVPFDTAPFVKVSIEKVIYTLFEAMALVFLVMFLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTMFGMVL AIGIIVDDAIVVVENVERLMATQGLSPKEATRQAMREITGAVIGITLVLTAVFIPMAFGSGSVGVIYQQFTLSMAVSILFSAFLALSLTPALCATLLRPV SAGHHDKRGFFGAFNRGFERLTASYGARVARLAGRSGRMMAAFAVLCAVLAVAAAQLPSAFLPEEDQGYFMTSIQLPTGATSERTLDVVKAYEAHVASRP GLDANLVVLGFSFAGSGPNAAMAFTMLKDWDQRDGATAAEEAELAQQAMADNVEGTVMSMMPPAIDELGTSSGFTLFLQDRANRGEAALLAAQAQLLELA AQSEVVSDVYPDGLPPGESIRLEIDRQKAEAMGLSFAAVSSTLSAAMGSLYVNDFPNAGRMQQVILQADASARMQLDDVLGLRVRNASGGMVALREVVTP VWSESPQQMMRFQGFPAVRIAGGAAAGVSSGAAMAEMERLVAQLPQGFALAWTGQSLQEQQSAAQAPLLMLLSALVVFLVLAALYESWSIPLSVMLVVPL GLLGAVAAVMLRGMPNDLFFKVGMITIIGLSAKNAILIVEFARQLHGEGRTLVNAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVF GGMLSGTLLAVFFVPAFFVFVIGTQERLSAWRARRGTAALPQENP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|