Pseudomonas sp. GM30, PMI25_003419
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGTCAAACGGTCGCAGCCCAGCGGTAAGTTTCGGAAATGCAACGAATTCCTGTTCGTGCGGCTGCGCGTGATACAGCACGTCGGTTGAAAAACAGGCG CGCACAAAAAAGGCCACTCTTTCGAGTAGCCTTTTTTGATGTTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTA CCAGACTGCTCCATCCCGCGTCTGTGTGTCGGCATTCTACAGAGGATCACCGGGGTGTCAACCTTGAATCTGGATAAATCTGTTCCTGTTCAATCGCTTA GCGCTTTTTGCAGTGCAGGAGAAGGGCGCGCAGGGCAGGTGGGGCAAGGCTTTCAGCTCTATCGGTCGGCGATTCTCGATTGAGAAAATAAATTCATGGT TGTTTTCCTACAACCTGAAAAGAACATTCAGACCACTGGTGCTATATACAGGTGTCAGTGAGATACTGCGTTTCCGGCTCGCCATGTTTCCTTTTCTGTC
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| DNA Sequence for Gene |
>PMI25_003419
ATGACCCAGCGAAAAATCATCCACGTCGACTGTGACTGTTTCTACGCCGCCATCGAAATGCGCGACGACCCGAACCTGGCCGGCAAGCCCCTGGCGGTGG GCGGGTTGGCGGATCGGCGTGGGGTGATTGCGACCTGCAACTACGAAGCGCGGGCGTATGGCGTACGTTCGGCAATGTCGTCCGGGCATGCCTTGAAACT GTGTCCCGACTTGACCATCGTCAAGCCGCGCATGGAGGCCTATCGCGAAGCCTCGAAGGAAATCCATACGATCTTTCGCGATTACACCGACCTGATCGAG CCACTGTCGCTGGATGAGGCTTATCTCGACGTCTCCGACAGCGCGCATTTTGGCGGCAGCGCCACGCGCATCGCTCAGGATATTCGCCGGCGGGTCTCCA ATCAGTTGCACATCACCGTCTCTGCTGGCGTGGCCCCGAACAAGTTTCTGGCCAAGATCGCCAGTGACTGGAAGAAGCCCAACGGGTTGTTCGTGATTAC CCCGGATCAGGTCGATGATTTCGTCAGTGGCTTGCCGGTGAGCAAGTTGCACGGCGTCGGCAAAGTCACTGCCGACAAACTGGGCAAGCTCGGCATCGTC GATTGCCTGCAACTGCGCGAGTGGGACAAGCTGGCACTGGTGCGCGAATTCGGCAGTTTCGGTGAGCGACTCTGGAGCCTGGCCCGTGGGATCGATGACC GGTTGGTGCACAACGACAGCCGCCGTCAGTCAATCAGCGTGGAAAATACCTACGACGTCGATCTGCCGGATCTGCGCAGTTGCCTCGACAAACTGCCGGA GCTGCTGGAAACCCTGAAAACCCGCATGGAGCGGATCGACAGCAGCTATCGCCCGGGCAAGCCGTTCGTCAAAGTGAAGTTCCATGACTTTACTCAGACC ACACTGGAGCAAGCCGGCGCAGGGCGCGATCTGGGCAGTTATCAGTTGATGCTGACCCAGGCGTTCAACCGGGGCGGGAAACCGGTGCGGTTGTTGGGTG TGGGGGTGAGGCTGGAGGATTTGCGCGGTGGGTTTGAGCAGATGGAGCTGTTTGAGCGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTTGCGGTGTCCGTCAGGACCTCTTCGCGAGCAAGCTCGCTCCCACATTAGATTGCATTCCACTGTGGGAGCGAGCCTGATCGCGAAGCTTTTGCTGTT AATTCGGTCCTGGATCCGCGACCAGGCGCCCCGCATCCTTGGTCAGCGACTTGAGAAACTCGGCCTGCAACTCAGGATCGTTACGCGTCAGTTCAATGAG GCTTTGTTCCAGCTCGCTGGCCTCTTCCTCCAGACCCAGTTCCGACAGACGCTTGACCCGGTGGACCCACTGGCTCACTTCGTCGTCTTCCAGATCGTCG TAAATCAACCCGTGCGCTTCGAGCAACTTGCTGCGCAAATGGCTGCTGATCGCCAGGGATGAGTCGCTGTGCACGTCATCCTTGCCGTCTTCGACGCTGA TCTGCAGCTTGCCGATATGATTCAGGTCATTTTCGGCGAACGGACTGTCCAGCAGGTTCAGGCGCAGCACGCCGTTGCGGTCGGTGGTCATGTCGAAGGT
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| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHVDCDCFYAAIEMRDDPNLAGKPLAVGGLADRRGVIATCNYEARAYGVRSAMSSGHALKLCPDLTIVKPRMEAYREASKEIHTIFRDYTDLIE PLSLDEAYLDVSDSAHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVDDFVSGLPVSKLHGVGKVTADKLGKLGIV DCLQLREWDKLALVREFGSFGERLWSLARGIDDRLVHNDSRRQSISVENTYDVDLPDLRSCLDKLPELLETLKTRMERIDSSYRPGKPFVKVKFHDFTQT TLEQAGAGRDLGSYQLMLTQAFNRGGKPVRLLGVGVRLEDLRGGFEQMELFER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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