Pseudomonas sp. GM30, PMI25_003797
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGCAGCGACAACGTGTCGATCGAATACAAGGAGTTCGGTATCCGCCTGACCCTGACGCCGACCGTCATCAGCCACGACCGCATCGCGCTGAAAGTCG CACCGGAAGTCAGCGAACTGGATCTGAGTAACGCCGTGCAAATCGCCGGCACTACCGTGCCGGCCCTGACCATTCGCCGCACCGACACCAGCGTTTCGCT GGCCGACGGCGAAAGCTTCGTGATCAGCGGCCTGATCAGCACCACCAACACCTCGCAGGTGAACAAGTTTCCGGGGCTGGGCGATATCCCGGTGCTCGGC GCCTTCTTCAAAGGCTCGCAGATCAAGCGCGAAGAGCGTGAACTGCTGATGATTGTCACCCCGCACCTGGTGCAGCCACTGGCGGCGGACGCGCAACTGC CGTCGCTGCCGGGGGAAAAACTGCGCAATTACGACCCGAATTTCTACCGCATGTTCTTCCTCGAAAACGGCAACTTCGACAAACGCAGTGGGCTGTCCCA
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| DNA Sequence for Gene |
>PMI25_003797
ATGAACCAGAACCTGAGCCAGACCTTTCTGGCGATCACCCGTAACAGCACCGATCTGGAGTGGCTGCAAGGCGCACTCGCGCCGCTGGGCCAGGTGGTGA GCGCCGGGGCCGGGAGCCTGGACGAGTTGCTGGCGCTGGTCGACGTCACCTTCGCCAGCCTGGTGTTCGTCGGCCTCGACCGCGAGCATGTGGTGGCGCA GAGTGCGTTGATCGAAGGCGCGCTGGAAGCCAAACCGATGCTCGCCATCGTTGCGCTCGGCGATGGCATGGACAACCAACTGGTGCTCAATGCCATGCGT GCCGGCGCCCGGGATTTTGTCGCCTACGGTTCGCGCGCCAGTGAAGTCGCCGGGCTGGTGCGGCGCTTGAACAAGCGCCTGCCACCGGTGGCGGCCAACA CGCAGCTTGGCGGCCTTACGGTGTTGTACGGCACGCAGAGCTATTCGGATGGCGCGCTGCTGGCCAACCATATGGCGCAGGTGGTGCAAAAGAGCGGACA GCAGACCTTGCTGCTGGATCTGGGCCTGCCGCGCGGTGACAGCCTGGCGCTGCTCGGGCTCGAGAGTTCGTTCCACTTCGGCGATGCCTTGCGTCATTTG CGCAGGCTCGACGCGACGCTGATCGACAGTGCCTTCACCAGCGCTGAAGCGGGTCTGCGGATTCTGGCGTATGCCGGCAGCGACGAGCCGCTGGAAAGCA CCAGTGCCGCCGAGTTGTACATGTTGCTCAGCGCCTTGCGCCAACACTTCCAGCACATCGTCGTGAACCTCACCGGGCAGTCCGACAGTGAAGCCTTGCG CACGTTCGTCAGCCACTGCGACAAGCTGATCTGGTACACCGATCAGAACGTGCTCAACTGCCGCCGCAACCTCGCGGTACTCAACTTGTGGCGCGAGAAG GGCATGAAGCTCGACCACGCGCGTTTGCTGGTGGACGGCTATCTGGGCAGCGTGGCCCCGGATGCTGAAACCCTGGGCAAAACCTTCAACCTTGAAGTGA TCGCGGTATTGGCGGCCAATGCCGAAGTGCGCCTGAACGCCAAGAACCAGGGCGTCAGCTTGTTCGAACTGGCCCCGCGGGAAAAACTCACGCAAAGCCT GCGGGCTCTCGGCGAACGTCTGGCCAAGCGCTCGGAAGGCCTGGCCAAACCCAAGGTCACCTGGTTCGACCGCTTGCGAGGCACCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCGGAAAAACTGTTCGGCGCGGTACACCACGGCGCGGTCGGCAATACCGATCACGAAGGCCTGAAACTGGTCCTGCACCGCTACATCATCGACGCCAT CGAAGAGTCGGGGAAAAACCTGCTGGAGGGATCGCGTCAGTTGCTGGCGCAGTTTGTCACCGACAAGGTCGCCGAATACATCGCCCGCCTGCACCTGGCG ATTTCCCGTTATGAGATGGAGCGCCTGGCCGAGGAAATCGTCGACGAACTTACCGGTTTCGGTCCGCTGGAAGTGCTGCTGCGCGATCAGTCAGTGACCG AGATTCTGGTCAACGGCCCGCACCGGGTATTCATCGAACGCGATGGCGTGCTGCATCAGAGTGACCTGCGCTTTATCGACGCGCATCACGTCGAGCGGGT CATGCAACGGATTCTCGCACCACTCGGACGGCGCCTCGACGAGTCTTCACCGATGGTCGATGCGCGTCTGCCGGACGGCAGCCGGGTCAACGCGATCATT
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| Amino Acid Sequence |
>Flp pilus assembly protein, ATPase CpaE
MNQNLSQTFLAITRNSTDLEWLQGALAPLGQVVSAGAGSLDELLALVDVTFASLVFVGLDREHVVAQSALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRASEVAGLVRRLNKRLPPVAANTQLGGLTVLYGTQSYSDGALLANHMAQVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDATLIDSAFTSAEAGLRILAYAGSDEPLESTSAAELYMLLSALRQHFQHIVVNLTGQSDSEALRTFVSHCDKLIWYTDQNVLNCRRNLAVLNLWREK GMKLDHARLLVDGYLGSVAPDAETLGKTFNLEVIAVLAANAEVRLNAKNQGVSLFELAPREKLTQSLRALGERLAKRSEGLAKPKVTWFDRLRGTS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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