Pseudomonas sp. GM30, PMI25_004020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCCCTCACAGTGAACTCGTCGGTGCGTTGTATCGCGACCATCGCGGTTGGCTGCTGAGCTGGTTGCGGCGCAACGTGGCGTGCCCACAGCGCGCCGAAG ACCTGAGCCAGGACACCTTCGTGCGCCTGCTCGGTCGCGAACAATTGCTGACGCCGCGCGAACCGCGGGCGTTTCTGGTGGCGATTGCCAAGGGCCTGCT GTTCGACTATTTCCGCCGCGCCGCGCTGGAGCAGGCCTATCTCGCCGAATTGATGCTGATCCCCGAAGGCGAACAGCCTTCGGTGGAAGAACAGCAATTG ATCCTCGAAGACCTCAAGGCCATCGACCGCCTGCTCGGCAAATTGTCGACCAAGGCCCGCGCCGCTTTCCTGTATAACCGCCTCGACGGCCTCGGCCATG CCGAAATCGCCGCGAAGCTCGGCGTCTCGGTGCCGCGTGTGCGGCAATACCTGGCTCAGGGCATTCGCCAGTGCTACATCGCCCTCTACGGTGAGCCGAC
DNA Sequence for Gene
>PMI25_004020
ATGAGCCCGGCCAGCTCCAAACCGGTTTCGGCCCAGGTGCTGGACGCGGCGATTGCCTGGCAATTGTCGCTGGATTCCAGCAGTGCGCTGGAGCGCGAAG AGTTCGCCAAATGGCACGCAGCCAATGAAGAACATGCCCGCGCTTGGCGTCAGTTGGGCATGCTCGATCAGCGCTTCAGTGTCGCCAACGGCCCGGCCCG CGCTGCGTTGCTGCAATCACGCGAGGGCATTCGCCGCAGAGTGCGCAAGCTCGGCAGCGGACTGGCCAGCGTGGTGGCGGTGGTCGGTCTGGCGCTGTTT GCCGGTGATCGGTACCTGCCGCTGGATTACTGGCTGGCCGATCAACGCACCGCCACCGGCGAGCAGCGCACGGTACGGCTGACCGATGGCACCGTGCTCA ACCTCAACACCCACAGCGCGGTGGATGTGCGTTTCGATGCCAGCCAGCGCCTGATCGTGTTGCAGGAGGGCGAGATCATGGTCGAGACCGGTCACGGCGA TGCGCGGCCCTTTATCGTCGAAACCCGCGAAGGCAGCATGCGCGCGCTGGGCACACGGTTTCTGGTCAAGCGTGAAGATGAGGGTACGCGCCTGAGCGTC CTGCAATCGGCGGTGGCGGCGCATCCGCAAAGTCATCCTCAAGAGCAGATTCTGCGCGAAGGCCAGCAAGTGCTGATTCGCAACGACGGCCTCGACGCGG TCGCCGCACTCACGCCCGGCGCCGATGCCTGGACCCGCGGCATGCTGGTAGTCGATAACGCACGGCTCGGTGATCTGGTGCACGAACTCGGGCGCTACCG CCGTGGCTATCTGGGCGTCGCCCCGGAGGTTGCCGACTTGCGCATCACCGGCAGCTTCCCGCTGCACGACACCGACAAGGCCCTGAGTGCGCTGCTGCCG ACCCTGCCGGTGCAGATCGAGCAGCACACGCCGTATTGGGTCACGGTGGCGAAGGCTGATACCAAGCCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGGCGACCGACCTCTGTGGCGAGGGAGCTTGCTCCCGCTCCGCTGCGCAGCAGTCGTCAAACCAGTCAATGCGATTTATCTGAAAGACAGCAGGGACCGC TTCGCGCTCCAGCGGGAGCAAGCTCCCTCGCCACAGGGTCTCGGTCACTTTTCAGTTAATCGAAATTATTTTCATCCAGCCCTATCACTTTTCAATTCTC GTCCGGCACACAGGCAATTGAGAAATATTTCCATTCAGGAGCCTTCGCATGTCCCGTTCGCTAGACACCTTGTTGCGCCCCAGTCTGCTGGCTGTCGCCA TCGCCCTCAGCACCCCGCTGATCAGCCACCCGTTGCTCGCCGCTGAGCAGGCCTCCAGCGTACGCGCCTACAACCTGCCGGCCGCTCCGCTGTCGACCAC CCTGAACCAGATCGCCAGCCAGGGCGGCCTCGCGCTGTCGCTCAATCCCTCGCTGGCGGCGGGCAAGACGTCGGCACCGGTCAACGGCCAATACGATGCC
Amino Acid Sequence
>amino acid ABC transporter substrate-binding protein
MSPASSKPVSAQVLDAAIAWQLSLDSSSALEREEFAKWHAANEEHARAWRQLGMLDQRFSVANGPARAALLQSREGIRRRVRKLGSGLASVVAVVGLALF AGDRYLPLDYWLADQRTATGEQRTVRLTDGTVLNLNTHSAVDVRFDASQRLIVLQEGEIMVETGHGDARPFIVETREGSMRALGTRFLVKREDEGTRLSV LQSAVAAHPQSHPQEQILREGQQVLIRNDGLDAVAALTPGADAWTRGMLVVDNARLGDLVHELGRYRRGYLGVAPEVADLRITGSFPLHDTDKALSALLP TLPVQIEQHTPYWVTVAKADTKP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site