Pseudomonas sp. GM30, PMI25_004344

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg15, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGACCAGCTGTAAGGGATCGCTGTGCGACTGCGACTGATCGCCGTCGGTTCACGCATGCCCAAGTGGGTGGAAGAAGGCTGGCATGAATATGCCAAGCGT CTTCCGTCCGAGCTGGCGCTGGAACTGGTGGAAATTCCGCTCAATACCCGTGGCAAGAACGCCGACGTGGCCCGTTTCATCCGCCAGGAAGGCGAAGCGA TGCTGGCCAAGGTCGGGCCGAACGAGCGGATTGTTACGCTGGAAGTCCACGGCAAACCCTGGAGCACCGAGCAGCTGGCGGTCGAACTCGACCGCTGGCG GCTGGATTCGCGCACGGTCAATTTCATGGTCGGCGGCCCCGAAGGGCTGGCGCCGGAAGTCTGCGCCCGCGCCGATCAACGCTGGTCGTTGTCGCCGCTG ACCTTGCCGCACCCGCTGGTGCGGATCCTGATCGGCGAACAGCTGTACCGTGCCTGGACCGTGCTGTCCGGTCACCCTTACCACAAGTAGTCCTGCCCTC
DNA Sequence for Gene
>PMI25_004344
ATGTCTCAGCCGATCCGCATCAAGGACCACGAAAAGGACGCCCGCCTGGTGCGCAGTCGCGTCGTGTTCGGGGCCATTGCGGTCATGCTGTTGATCTGCG TGTTGATTGCGCGGCTGTACTACTTGCAGGTGATCCAGTACGAGTACCACTCGACACTCTCGGAAAACAACCGCGTCCATGTGCAGCCGATTCCGCCGAC CCGCGGCTTGATCTTCGACCGCAACGGCGTGGTGGTGGCGGACAACCGTCCGAGCTTCAGCCTGAGCATGACCCGCGAGCGTTCCGGCGACTGGCAGCAA GTGCTCGACGTGATCGTCGAAGTGCTGCAACTGACGCCCGAGGACCGGGTGATCTTCGAGAAGCGCATGCGTCAGGGGCGCCGGCCGTTCGAGCCGGTGC CGATCCTGTTCGAGCTGACCGAAGAGCAAATCGCCCGGATCGCGGTGAACCAGTTCCGCCTGCCTGGGGTGGAAGTGGTTGCGCAACTGGTGCGCCATTA CCCGCAGGGCGCGCATTTTGCGCACTCGGTGGGTTACATGGGGCGCATCAACGAGAAAGAGCTGAAGAGCCTCGACCCGGTCAACTACAGCGGCACCCAT CACATCGGCAAGACCGGCATCGAGCGTTTCTACGAGCCGGAACTGCACGGCCAGGTGGGTTACGAGGAAGTCGAGACCAACGCCCGCGGCCGCGTATTGC GCGTGCTCAAGCGTACCGATCCGATTCCCGGCAAGGACATCGTCCTGAGTCTGGACATCAAACTGCAGGAAGCGGCCGAAGCCGCGCTGGGCGGGCGTCG CGGCGCGGTGGTGGCGCTCGATCCGAAGACTGGCGAAGTGCTGGCGATGGTCAGCCAGCCGAGTTTCGACCCGAACCTGTTTGTCACCGGCATCAGCTTC AAGGCCTATGCCGAGCTGCGCGATTCCATCGACCGGCCGCTGTTCAACCGCGTGCTGCGCGGCCTGTACCCGCCAGGCTCGACGATCAAGCCGGCGGTGG CGATTGCCGGTCTCGATTCTGGTGTAGTGACGGCGTCGAGCCGGGTGTTCGACCCCGGTTACTACATGCTGCCCAACTACGATCACAAGTACCGCAACTG GAACCGTACCGGTGACGGCTTCGTCGATCTCGACACGGCGATCATGCGTTCCAACGACACTTACTTCTATGACCTGGCGCACAAGCTGGGCATCGATCGG TTGTCGGCCTACATGAACAAGTTCGGCATCGGTCAGAAGGTCTCGCTGGACATGTTTGAAGAATCCCCCGGCCTGATGCCGTCCCGCGAGTGGAAGCGTG CGACACGCAAGCAGGCCTGGTTCCCGGGTGAAACCCTGATTCTGGGGATCGGCCAGGGTTATATGCAGTCCACACCGCTGCAACTGGCGCAGGCCACGGC GCTGGTCGCCAACAAAGGCATCTGGAACCGCCCGCATCTGGCTAAGACCATCGAAGGCGCCAAACCGGTAGACGAGAACCCGATGCCGGACATCGTCCTG CGCGATCCGTCGGACTGGACCAAGGTCAACCACGGCATGCAGCAGGTGATGCACGGCGCCCGCGGTACTGCGCGCAAGGCAGCAATCGGTGCGCAATACC GCATCGCCGGCAAGTCAGGTACCGCTCAGGTGGTGGCGATCAAGCAAGGTGAGAAATACGACCGTTCCAAGGTTCAGGAACGCCACCGCGACCACGCCTT GTTCGTCGGTTTCGCCCCGGCCGACAACCCGAAAATCGTGGTTTCGGTGATGGTCGAGAACGGTGAGTCCGGCTCCGGTGTCGCCGCGCCAGTGGTGCGT CAGGTCATGGATGCCTGGCTTCTGGACCAGGATGGTCGATTGAAGGCCGAATACGCCGGTCCTATCAGTGCGGAGGCTACGGCCCGTGATGAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTTGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGCCGGGCGACGCTGCTGCAACGTCTGCATATCGATGGCCCGCTGTTGATCCTGCTGCTGATC CTCGCCGCAGGCAGTCTGTTCGTGCTGTATTCGGCCAGTGGCAAGAGCTGGGATCTGCTGGGCAAACAAGCCACGTCGTTCGGCATCGGCCTGGTGTCGA TGGTTGTCATCGCCCAGTTCGAACCACGGTTCATGGCGCGTTGGGTGCCGCTCGGTTATGTGGTCGGCGTGGTGCTGCTGATGGTGGTGGACATCATGGG CCACAACGCCATGGGCGCGACGCGCTGGATCAACATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAGTTCATGAAGATTCTGATGCCGGCGACGATTGCC TGGTATCTGTCCAAACGCACGCTGCCGCCGCAGCTCAAGCACGTCGGCATCAGCCTGATGCTGATCGGCGTGCCGTTCATTCTGATCGTGCGCCAGCCTG
Amino Acid Sequence
>penicillin-binding protein 2
MSQPIRIKDHEKDARLVRSRVVFGAIAVMLLICVLIARLYYLQVIQYEYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQQ VLDVIVEVLQLTPEDRVIFEKRMRQGRRPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYMGRINEKELKSLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPKTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASSRVFDPGYYMLPNYDHKYRNWNRTGDGFVDLDTAIMRSNDTYFYDLAHKLGIDR LSAYMNKFGIGQKVSLDMFEESPGLMPSREWKRATRKQAWFPGETLILGIGQGYMQSTPLQLAQATALVANKGIWNRPHLAKTIEGAKPVDENPMPDIVL RDPSDWTKVNHGMQQVMHGARGTARKAAIGAQYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVSVMVENGESGSGVAAPVVR QVMDAWLLDQDGRLKAEYAGPISAEATARDE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site