Pseudomonas sp. GM30, PMI25_004285

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg15, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCTGCCCGGTTACATTGTGCCGCTGGAGGTCAACGAAGAAGGACGCACCACCGACTTCCTGCTGGTGCCGTACTTCGGCGCCTGCATCCACGTGCCGCC ACCGCCGTCGAATCAGATCGTGCATGTAAAAAGCGAGCTGGGGGTGAAGCTCGACGAGCTGTATCAACCGTACTGGGTCGAGGGACCGTTGCAGGTCAAG GCGTCCACCAGCGAACTGGCGGATGCCGGGTATCAGATGGCGGCGGACAAGATTTATGTGTATGAGCTGCCGGAGTAAGTCCGGTCGTTCTGCACTGTTC GGCCCATTGTCTTCGCGAGCAAGCTCGCTCCCACAGTTGACCGAGCTCTAATGTGAGAGCGAGCTTGCTCGCGAAGGGGTCGGCCAAGGTTCCACAAAAA ACCGCCCCTTCACTGTTTCATTGAGCTGAGTCAAAAGACCGTATCAGACGGATTCGTACCATAGGACATCAAACATTTTTAACGTCCTTTGGGAGCCCCC
DNA Sequence for Gene
>PMI25_004285
ATGAACAAGTCCTTGCTCAGCGCCTCGCTGTTTGCATTCGCGCTCGCAGCCCCGCTCGCCCACGCCCACGAAGCCGGCGACATCATCGTTCGCGCCGGTG CGATCACCGTCAACCCGAAGGCCGACAGCTCCAGCGTCAAGGTCGATCAGGGTCCGTTGAGCGGCACCAACCTGGGCGGCAAGGCGACCATGAGCAGCGA CACCCAACTGGGTCTGAACTTCGCTTACATGCTGACCAACAACATCGGTATCGAGTTGCTGGCCGCCTCGCCGTTTGAGCATGACGTGAAGATCAAAGGC ACCGCGCTGCCAGCCGCCAACGGCAAACTCGGCACCCTGAAACACCTGCCGCCCACCCTCAGCGTCGTGTACTACCCGCTGGATGCGAAATCGCCATTCC AGCCTTACATCGGCGGCGGCATCAACTACACCTGGATCTACGACGAGCACGTCGGCAGCGAAGCGCAGTCCAACGGCTTCGGCAACTTCAAGGCGAAAAA CTCCTGGGGCCTGGCCTGGCAGGTCGGCGCCGACTACATGCTGACCGACAACATCATGCTCAACGCCCAGGTGCGCTACATCGACATCGACACCCGCGCG ACTGTCGAGAACAACGCGGTGGCGCCGGGCACCCGTGCCAAGGTGAATGTCGACGTCGATCCGTTTGTGTACATGGTGGGTCTGGGCTACAAGTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAACAGTCGAACATTCGCGTGGTGGTGAATGCGGGCTAATGTGGCGAGGGAGCTTGCTCCCGCTGGGCTGCGAAGCAGCCCTGAACAAGGCAAAAGCGG TGCTTCAGAAAAACCGCGTTGACTGAATTTGCGACTGCTGCGCAGTCGAGCGGGACGGTGCGACGATTCGACGAGCTCCCTCGCCACAGGGATTGCACCG AGCGTCAAAGCGATACCCCGCCCACAAAAAAGGCGCCTGCAAAGGCGCCTTTTTTGTTTTTTCGATTTAGCGTCCCAGCAACCGCGCCAGCCCCACACGC ATCGGCGTCGGCTCCGGCAGCTTGAAGCGTTGCAGCAAACGCGCGTTGTTCGCCCGCGAATGGCGGATGTCACCGGAACGTGCCGGGCCGTAGCTGATCG GAGGCAGCTCGCCAACCACGTCTTGCAGCGCCTGCAGCATCTGCTTGAGGTTCATCGCCTGATTCCAGCCGACGTTCATCGCACCCACTTCCACCTCAGG
Amino Acid Sequence
>outer membrane protein W
MNKSLLSASLFAFALAAPLAHAHEAGDIIVRAGAITVNPKADSSSVKVDQGPLSGTNLGGKATMSSDTQLGLNFAYMLTNNIGIELLAASPFEHDVKIKG TALPAANGKLGTLKHLPPTLSVVYYPLDAKSPFQPYIGGGINYTWIYDEHVGSEAQSNGFGNFKAKNSWGLAWQVGADYMLTDNIMLNAQVRYIDIDTRA TVENNAVAPGTRAKVNVDVDPFVYMVGLGYKF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site