Pseudomonas sp. GM30, PMI25_004524
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCGCTTCGAGCTGGCTCATGTAAGTGCTGATCGCCGAGGTCGACAGGTTGAGTTCCTGCTGCGCATTGGCAAAGCCCTGATGGCGGACCACGCTGAC GAAGATGCGCAATAGTTTCAGGTCGGGTAAAGCGTTGGCCATGCGGCTCTCCAAACATCTGTCGAACGCTGATGACTTTGTGGTGAGGGGATTTATCCCC GATGGGTGGCGAAGCCGCCCCAAGCCTGCAAACCAATCCATCCGGGAAGTCGCGAGCAACGAATTTACGACTGCTGCGCAGCCGATCGGGGATAAATCCC CTCGCCACAGGGGTATCGGTACGGGTTCGGGAAGTCTATCCCGCGCCTCTCCATTAGTTTAGAAAAATCTGAACTAAGTTTTTGCCCGTAGCGATTCTTC CGCCGCACTACATTTCGCAGAATCAGCCCCACAGCGGCGTCCGAACCTGTGCTGAACGGTGCGCCGACATAAATAAAACAAAGACGATGAGGCCCTACCC
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| DNA Sequence for Gene |
>PMI25_004524
GTGGACAAGATTCTTCACCAACCACTGGGCGGCAACGAAATGCCGCGCTTCGGCGGCATCGCCACCATGCTCCGACTCCCCCATGTACCGACCGCTGCCG GCCTGGACGCTGCCTTCGTTGGCGTGCCCCTGGACATCGGTACTTCGCTGCGCCCCGGCACCCGCTTCGGGCCGCGCGACATCCGCACCGAATCGGTGAT GATCCGCCCGTACAACATGGCCACCGGCGCCGCGCCGTTCGACTCGCTGTCGGTGGCCGACATCGGTGACGTGGCGATCAACACCTTCAACCTGCTCGAC GCCGTGCGCATCATCGAAGAAGCCTACGACAACATCCTCGAGCACAACGTGATCCCGATGACCCTGGGTGGCGACCACACCATCACCCTGCCGATCCTGC GTGCCATCCATAAAAAGCACGGCAAGGTCGGTCTGGTGCACATCGACGCTCACGCTGACGTCAACGATCACATGTTCGGCGAGAAGATCGCCCACGGCAC GACCTTCCGTCGCGCCGTCGAAGAAGGTCTTCTGGACTGCGACCGCGTGGTGCAGATTGGTCTGCGCGCACAGGGCTACACCGCTGACGACTTCAACTGG AGCCGCGATCAGGGCTTCCGTGTCGTACAAGCCGAAGAGTGCTGGCACAAGTCGCTGGCGCCGCTGATGGCCGAAGTGCGCGAGAAAGTCGACGGCGGCC CGGTGTACCTGAGCTTCGACATCGACGGTATCGACCCGGCCTGGGCGCCAGGCACCGGCACCCCGGAAATCGGTGGTCTGACGACCATTCAGGCGATTGA AATCGTTCGCGGCTGCCAGGGCCTCGACCTGATCGGCTGCGATCTGGTAGAAGTCTCGCCCGCCTACGACACCACCGGCAACACCTCGCTGCTGGCTGCC AACCTGCTGTACGAAATGCTCTGCGTACTGCCTGGCGTGGTCCACCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGTTCGGCCATGAACGAACGTGATCAGGTGTTGCAAGCGGCTGCCGATCTGGTGTCCGCCTTCGCTCGCAACGATCGCGAAGCTTATTTCGGCGCGTTC AGCGCCGATGCAAGTTTCGTGTTTTACACCCTCGAGCAGCCACTGCTGTCGCGCGATGCCTATCAGGCCTTGTGGGACAGCTGGCGCACCGAGGATGGCT TTGAAGTGCTGTCGTGCACTTCGAGCAACGCCTTCGTCAGCCTGCAGGGTGACGTGGCGGTGTTTATCCATGACGTGGCCACCGAGCTGCGCATGCAAGG GGAGCAACACTTCAGCCAGGAGCGCGAGACGATTGTTTTCAGGAAACAAGCGTCGAGCCTAGAACAACAAGGCCATTGGCTGGCCTGCCACGAACATTTG TCCGCAATGCCGGAAGGGCTGCCATCCCCTTAGCCAAGACAGGTGACGCTCACGCACGATGAGCGCGCCTTTATGATCGGAGCAGATCATGAATAACAAC
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| Amino Acid Sequence |
>agmatinase
MDKILHQPLGGNEMPRFGGIATMLRLPHVPTAAGLDAAFVGVPLDIGTSLRPGTRFGPRDIRTESVMIRPYNMATGAAPFDSLSVADIGDVAINTFNLLD AVRIIEEAYDNILEHNVIPMTLGGDHTITLPILRAIHKKHGKVGLVHIDAHADVNDHMFGEKIAHGTTFRRAVEEGLLDCDRVVQIGLRAQGYTADDFNW SRDQGFRVVQAEECWHKSLAPLMAEVREKVDGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAIEIVRGCQGLDLIGCDLVEVSPAYDTTGNTSLLAA NLLYEMLCVLPGVVHR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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