Pseudomonas sp. GM30, PMI25_004695
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCTCAACGCGGCGATTCAGGCCTCGATGGCCGGGGACGCCGGGCGCGGCTTTGCCGTGGTTGCCGACGAAGTACAGCGACTGGCCGAACGTTCGTCCG CCGCCACCCGGCAGATCGAAACCCTGGTGCGGGCGATCCAGACCGACACCAACGAAGCGGTGATTTCCATGGAGCAGACCACCACCGAAGTGGTGCGGGG CGCGCGACTGGCGCAGGATGCCGGAGTGGCACTGGAAGAAATCGAAGGCGTTTCGAAAACCCTCGCCGCGTTGATTCAAAGCATTTCCAACGCGGCGCAG CAGCAGACTTCGTCGGCCGGGCAGATCTCGCTGACGATGAACGTGATCCAGCAGATCACCTCGCAGACCTCGTCCGGCTCCACCGCCACCGCCGAGAGCA TTGGCAATCTGGCGAAAATGGCCAGTCAGCTGCGCCGTTCGGTATCCGGTTTCACCTTGCCGTCGGCGTCCGCGACGGACAAGGCGTGAGTGGAGTGGTT
|
|
| DNA Sequence for Gene |
>PMI25_004695
ATGGGTGACCGGCACGACTACGTGGCCCTCGAATGGGTCAAGGGTGAAATTGCCGAAACGCTGAGGCTGGCGCATCAGGCGATTGAAACCGTGCTCGATG ACCCGCAGGCCACGCCGGGGCTGGATGAGTGTCTGGCCTATATCCATCAGGTGCACGGCAGTTTGCAGATGGTTGAGTTCTATGGCGCGGCGTTGCTCGC CGAAGAAATGGAGCATCTGGTCGAAGCCTTGCAGCAGGGGCGCGTCGCCCATCGCGACGAAGCCCTGCACTTGCTGCTGCAAGCCCTCGGGCAACTGCCG ATCTATCTCGATCGGGTGCAGAGTGCCCGCCGCGATCTGCCGTTGGTGGTGCTGCCGCTGATCAACGATCTGCGCAGTGCGCGCGGCGACAGCCTGCTTT CGGAAACCAGCCTGTTCAGCCCGCCACTGCCGGACTTGCCGCCGTTGAGCGCAGAAGCGCTGGCCGCGCTGGAGCCGGCCGAGTGGCCCAACATGCTGCG CAAGTTGCGCCAGATGCTGCAGATGGCGCTGGTCGGTTTGCTGCGCGAGCAGGATGACCAGACGCACTTCGAATACCTGGCGAAAGTCTTCCAGCGCCTC GAAGCGCTCAGCGGCGATGCGCCGTTGAGTCCGCTGTGGCAGGTCGCCTCCGCGCTGGTTGAAGGCATGCGCGAAGGCGCCATCGCCAACAGCCCGGCGT TGCGCAGCCTGTTCAAGGACGCCGACAAGGAACTCAAGCGCCTGCTCGAACAAGGCCCGCGCGGCCTCAATCAGCCGCCCCCGCCGGAGTTGCTGAAAAG CCTGCTGTTCTATATTGCCAAAGCCGAACATCCCACCGGGCAGATGCTGACCATGAAAGATCGCTACTCCCTGGACGACGCGTTGCCCGACAGCGCGATG GTCGACGAAGAACGCGCGCGCCTGGCCGGCCCCGACCGCGATGCGATGCGCTCGGTGCTGGCGGCGCTGTGCGAAGAGCTGGTGCGGGTCAAGGAACGCC TCGACCTGTTCGTCCGTAGCGATCGTCAGCACACCTCCGATCTGGAGAGTCTGCTGGCGCCGTTGCGGCAGATCGCCGACACCCTCGCGGTGCTCGGTTT CGGCCAGCCGCGCAAAGTCATCATCGATCAACTGGCGGTGGTGCTCAGCCTCGCCCAGGGCCAGCGCGAACCGAATGACGCGACCCTGATGGACGTTGCC GGTGCGCTGCTCTACGTCGAGGCCAACCTCGCCGGAATGGTCGGCACTGTAGAGCCGGAAAGTCTCGAAGACGCGCGCCTGCCGACCACCGACCTGACGC AGATTCATCAGATCGTGATCAAGGAAGCACGCATCTGCCTGCAACAGGCCAAGGACATGATCGTCGATTACATCGACGCCGACTGGGATCGCCAGCAACT GCAGCCGCTGCCGGAACTGCTGACCCAGGTGCGCGGCGCGCTGGCGATGATTCCGCTGAGCCGGGCGGCGAGTCTGGTCGAGGCCTGCAACAGCTTCATC CGCGAACACCTGCTGCTCGATCCGCACCAGCCAGGCTGGCAGCAACTGGATAATCTAGCCGACGTCATCACCAGCCTCGAGTATTACCTCGAGCGCCTGA GCGACGACCCGCAAGCGCCGAATGAACAACTGCTGGATGTCGCACAAAAAAGCCTCGCCAGCCTCGGTTTCTTTCCACATGAGCCGCACGTACCGCTGCT CGACGATGTGCTCAGTCCCAGCGAAGCGCTGGTGATGCAGGACCTGCAAGCGCTGGATGACCCCGAGACCGTGCAGTCGCTGGCCGATGTATTGGCCAGC CCGGTCTCGGCGGTCAACCCGCCGGCCTTGATCACCCCCGGCAACCTGATGCCGCCGCCCGCCGACGAAGAACCGGTGGACGATGAACTGCGCGAAGTGT TCCTCGAAGAGACCGACGAGGTGCTCGAGGTTCTGCACGAATACCTGCCGCGCTGGTCGGCTGACGTTCATGACCGCGCCGCCCTGACCGAACTGCGCCG CGCCTTTCACACCTTGAAGGGCAGCGGGCGCATGGTGCGTGCGTTGATCCTTGGTGAGCTGGCCTGGGCCGTGGAAAACCTGCTCAACCGCGTGCTGGAA CACAGCGTCGAACCTGGCGCGCAGGTGCAGCAGTTGCTCACTGACACGGTGTTGCTGCTGCCGGAGCTGATCAGCGAATTCGCCACGCACCGCCAGCGTC AACGCAGCGATGTCGATCAACTGGCGGCCCGTGCGCATGCGCTGGCCAAAGGTGTCGAGCCGCTGGCGGCTGAAGACGTTGAGGATGTGGCGGCCCTCGA CCCGCTGTTGCTGGAGATCTTCCGCAACGAGGCCGAAACCCACCTCGCCAGCCTCAACCGCTTCCTCGATCAGGCCGCCGAGCATGTGCCGCTGCCGGCC AGCGACGAATTGCAGCGCGCCTTGCACACGCTCAAGGGCAGTGCGTCGATGGCCGGCGTGTTGCCGATTGCCGAACTGGCGGCGCCGCTGGATAAACTGG CGCGCGAGTTCAAGGCGCATCAGTTGCCGCTGGATCTCGATGAAGTGGAATTGCTCCTCGAAGCCGAAGGCCTGTTCCGCGTTGGTTTGCGCCAGCTCAA GCACGATCCGCTGGCGCCGATTGTCGGTGCGCAGTCGCTGATCAAACGCACCGAAACGCTGCTGGCCGAACGTCTGGAAGCGATCCTCAGTGCGCCGAGC ACCGGCCTGCGGATCAAGCGCGATCCGCAACTGATCAACAACTTCCTCGCCCAGGGCATGGACATCCTGCTCGACGCCGAAAGCCTGTTGCAACGCTGGC AGCAACACCCCGGCGAGCGCCAGGAACTCAGCGCGCTGCTCGATGAACTGACCACCCTCGGCGAAGGCGCACACCTCGCCGATCTGCTGCCGGTGGATGT GCTGTGCGAAGCCTTGCTCGACCTGTATGGCGCCGTCGAAGAAAGCAGCCTGGCGGTCAGCGACCGGTTTTTCCACGAGGCACAGAACGCCCACGAAGCG CTGATCAACATGCTCGACGAACTGGCCGCCGGCCAGGAAATCACTCCGCAGCCGCAGCGTATCCGCGCCTTGCACGAACTGCTCGATGAAAGCCTCGACC CGACGGCGATGGGGCTGATTCGCAGCGACGGCAGCCGCACCTTGAGCATCCATGAGCTGGGCGCCGCCACCGCCGAACTGTCCCACGCCAACGCCGAGAC GGCGCCGGACGACGAGATCGTCGAGATCTTTCTCGAAGAAGCGGTGGACATCCTCGACAGTGCCGGGCAAGCCCTGCAGCGCTGGTTGAGCGACCCGGAC AACGCTGCGCCGCTGTCGTCGTTGCAGCGCGATTTGCACACGCTCAAGGGCGGCGCGCGGATGGCCGAGGTCGATGCCATCGGCGATCTGGCCCATGAGC TGGAAGGACTTTACGAAGGGCTGGTGGATCGTCGCTACAGTCACAGCGAGGCGCTGGGGCGCTTGCTGCACAAGGGCCATGATCGCCTGGCCTTGTTGCT GGAGCAGTTGCAGGCGCATCAACCACTGCGCCCGGCGCAGGATCTGATCGAGACAATCCGCCAGTTCCGCCAGGGCGCCTCCGGCACTGTCGAAACGGCG CAACCGGCCGCCGACCACGACAGCGCCGCACATGACCCGGAACTGCTGGAAATCTTCCTCGAAGAAGGTTTCGACATCATCGAAAACTCCGGCGCCGCGC TGCAGCGCTGGCAGGCCGAGCCGGGCAATCGCCAGGAAGTGGAAACCCTGCTGCGCGATCTGCACACCCTCAAGGGCGGCGCGCGGATGGTCGAGATCGG CCCGATCGGCGACCTCGCCCATGAGCTCGAATACCTTTACGAAAGCCTCGCCACCGGCGTGCTGCAACCGTCCGCCGAACTGTTCGCGCTGGTGCAGCGC GGGCATGACCGGTTGGCGCAGATGCTCGATGGCGTGCGCGCCGGGCAGCCATGCCCGCCGGCGGATCGGCTGATCAGCGCGATCCAGAATTTCAGCCACC CGGCGACCCCGGACACGCCACCGCTGCTGCCGGTTACGGCCAAGACCGAGCCTGTCGCACCCGCCGCCGATGCCGGCGCGGACATGGTCAAGGTCTCCGC CGAACTGCTTGATGACTTGGTCAATCTGGCCGGGGAAACCTCGATTTTCCGTGGCCGCATCGAGCAGCAAGTCAGCGATGCGCAAACCGCGCTGAACGAG ATGGAAACCACCATCGAGCGCATGCGCGATCAGTTGCGCCGGCTCGACACCGAAACCCAGGGGCGGATTCTCAGCCGTCAGCAAGTCGATGCCGAACGCC TCGGTTACGAAGAATTCGATCCGCTGGAAATGGACCGTCATTCGCAGTTGCAGCAACTGTCGCGGGCGCTATTCGAATCTGCCTCCGACCTGCTCGACCT CAAGGAAACCCTCGACCGCCGCAACCACGACGCCGAAAACCTGTTGCAGCAGCAGGGGCGGATCAACACCGAATTGCAGGAAGGCCTGATGCGCACGCGC ATGGTGCCGTTCGAACGCATGCTGCCGCGCCTGAAACGCATCGTGCGGCAGGTCGCCGAAGAGCTGAACAAGGACGTCGCATTCATCATCGGCAACGCCG AAGGCGAGATGGATCGCAATGTGCTGGAGCGCATGGTTGCGCCGCTGGAACACATGCTGCGCAACGCCGTCGACCATGGCCTGGAGTCGGCTGAAGTGCG GCTGGCGGCGGGCAAACCGGCGCAAGGGACGATCACCCTGGACCTGACCCGCGAGGGTGGCGACATCGTTTTCGATATTCGTGACGATGGCGCCGGGGTG CCGCTGGAAGCGGTGCGGCGCAAGGCGATCAAGCGCGGCCTGCTTGCACCGGACGCCGAAATCAGCGACCGCGACGTGCTGCAATTCATCCTGCAGCCGG GCTTCTCCACGGCGGAAAAGATCACCCAGATTTCCGGGCGCGGCGTCGGCATGGACGTGGTGCACGAAGAAGTCCGTCAGCTCGGCGGCACCATGAGCAT CGATTCGGTGCCGGGGCAGGGCGTGCATTTCCGCATTCGTCTGCCGTTCACCGTGTCGGTCAACCGCGCGCTGATGGTGCAGTGCGGCGAGGATCAATAC GCGATTCCGCTGAACACCATCGAAGGCATCGTCCGCGTCCTGCCGAATGATCTGGAAGGGCACTTCCGTAACGATCCACCGAGCTACCACTACGCCGGCC AGCGCTATGAGTTGTGCTACCTGGGCGAGCTGCTGAAAACCGCGCCACGGCCGAAACTGCTCGGCCAGAGCCTGCCGTTGCCGGTGCTGCTGGTGCAGTG CAATGACCGGCATATTGCGGTGCAGGTTGATGCGATGGCTGGCACTCGCGAGATCGTGGTCAAAAGCCTCGGCCCGCAGTTCGCGGCGGTGCAGGGCGTT TCCGGGGCGACGATTCTCGGCGATGGCCGGGTGGTGCTGATTCTTGATCTACTCGCACCGATCCGCGCGATGCAGGCGCGGGTTGCGCAGCGTCCGGCGC AGGCGGAAATCGACAGCGAACCGCAAAAGCCACTGCTGGTGCTGGTGGTCGATGACTCGGTGACCGTGCGCAAGGTCACCAGCCGTTTGCTCGAACGCCA CGGCATGAACGTGCTGACCGCCAAGGACGGGGTCGACGCCATGTTGCTGCTCGAAGAACACATGCCCGACCTGATGCTGCTCGACATCGAAATGCCGCGC ATGGACGGCTTCGAAGTCGCCACCCAAGTGCGCAACGACGAACGCCTGCAGCACCTGCCGATCATCATGATCACCTCGCGCACCGGGCAGAAACACCGCG ATCGCGCGATGGCCATCGGTGTCAACGACTACCTCGGCAAGCCGTATCAGGAATCGGTGCTGCTCGAAAGCATTGCCCACTGGAGCAAGAAACATGCATG A
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGCCGCCACAACGCGCGCACCAGCCAACTCACCGGCCTGCTGCTGCCGTTGGCCGATCGCAACCTGATCCTGCCCAACGTCGCCGTCGCCGAACTGATC GACTACCAGGCCAGCGCCTTCGACCTCGACACACCGCCGTGGTACCTGGGGCGGGTGAGCTGGCGTGAGCGGCAGATTCCGCTGCTGAGTTTCGAGTCAG CCTGCGGGCAGAAAATTGTCATCGGCGAACGCGCGCGGATCGTCATCCTCAATGCCCTTGGTGGGTTGCCGCAGCTCAAATTCATTGCGCTGCTCGTGCA GGGGATTCCGCGCTCGTACAAGCTCGACAGTCAGTTGAGTTATGTCGATGTGCCGCTGTGCGCGCTGGAGCAGGCGGCGGTGCAGGTCGGGGAGCAGGTG GCCAAGGTGCCGGATTTGTTGGGGTTGGAGCAGTTGTTGGTGGAGGCCGGACTTATCCACTGATCCAGAGTTTGCGGTGATCTTGCTGGCCTCTTCGCGA
|
|
| Amino Acid Sequence |
>sensor histidine kinase
MGDRHDYVALEWVKGEIAETLRLAHQAIETVLDDPQATPGLDECLAYIHQVHGSLQMVEFYGAALLAEEMEHLVEALQQGRVAHRDEALHLLLQALGQLP IYLDRVQSARRDLPLVVLPLINDLRSARGDSLLSETSLFSPPLPDLPPLSAEALAALEPAEWPNMLRKLRQMLQMALVGLLREQDDQTHFEYLAKVFQRL EALSGDAPLSPLWQVASALVEGMREGAIANSPALRSLFKDADKELKRLLEQGPRGLNQPPPPELLKSLLFYIAKAEHPTGQMLTMKDRYSLDDALPDSAM VDEERARLAGPDRDAMRSVLAALCEELVRVKERLDLFVRSDRQHTSDLESLLAPLRQIADTLAVLGFGQPRKVIIDQLAVVLSLAQGQREPNDATLMDVA GALLYVEANLAGMVGTVEPESLEDARLPTTDLTQIHQIVIKEARICLQQAKDMIVDYIDADWDRQQLQPLPELLTQVRGALAMIPLSRAASLVEACNSFI REHLLLDPHQPGWQQLDNLADVITSLEYYLERLSDDPQAPNEQLLDVAQKSLASLGFFPHEPHVPLLDDVLSPSEALVMQDLQALDDPETVQSLADVLAS PVSAVNPPALITPGNLMPPPADEEPVDDELREVFLEETDEVLEVLHEYLPRWSADVHDRAALTELRRAFHTLKGSGRMVRALILGELAWAVENLLNRVLE HSVEPGAQVQQLLTDTVLLLPELISEFATHRQRQRSDVDQLAARAHALAKGVEPLAAEDVEDVAALDPLLLEIFRNEAETHLASLNRFLDQAAEHVPLPA SDELQRALHTLKGSASMAGVLPIAELAAPLDKLAREFKAHQLPLDLDEVELLLEAEGLFRVGLRQLKHDPLAPIVGAQSLIKRTETLLAERLEAILSAPS TGLRIKRDPQLINNFLAQGMDILLDAESLLQRWQQHPGERQELSALLDELTTLGEGAHLADLLPVDVLCEALLDLYGAVEESSLAVSDRFFHEAQNAHEA LINMLDELAAGQEITPQPQRIRALHELLDESLDPTAMGLIRSDGSRTLSIHELGAATAELSHANAETAPDDEIVEIFLEEAVDILDSAGQALQRWLSDPD NAAPLSSLQRDLHTLKGGARMAEVDAIGDLAHELEGLYEGLVDRRYSHSEALGRLLHKGHDRLALLLEQLQAHQPLRPAQDLIETIRQFRQGASGTVETA QPAADHDSAAHDPELLEIFLEEGFDIIENSGAALQRWQAEPGNRQEVETLLRDLHTLKGGARMVEIGPIGDLAHELEYLYESLATGVLQPSAELFALVQR GHDRLAQMLDGVRAGQPCPPADRLISAIQNFSHPATPDTPPLLPVTAKTEPVAPAADAGADMVKVSAELLDDLVNLAGETSIFRGRIEQQVSDAQTALNE METTIERMRDQLRRLDTETQGRILSRQQVDAERLGYEEFDPLEMDRHSQLQQLSRALFESASDLLDLKETLDRRNHDAENLLQQQGRINTELQEGLMRTR MVPFERMLPRLKRIVRQVAEELNKDVAFIIGNAEGEMDRNVLERMVAPLEHMLRNAVDHGLESAEVRLAAGKPAQGTITLDLTREGGDIVFDIRDDGAGV PLEAVRRKAIKRGLLAPDAEISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGTMSIDSVPGQGVHFRIRLPFTVSVNRALMVQCGEDQY AIPLNTIEGIVRVLPNDLEGHFRNDPPSYHYAGQRYELCYLGELLKTAPRPKLLGQSLPLPVLLVQCNDRHIAVQVDAMAGTREIVVKSLGPQFAAVQGV SGATILGDGRVVLILDLLAPIRAMQARVAQRPAQAEIDSEPQKPLLVLVVDDSVTVRKVTSRLLERHGMNVLTAKDGVDAMLLLEEHMPDLMLLDIEMPR MDGFEVATQVRNDERLQHLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQESVLLESIAHWSKKHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|