Pseudomonas sp. GM30, PMI25_000446
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATCTGGATGGGCATCATGATGTACCAGGTCAACAAGCACGGCCTGACGGCGACCAACAAGACCCGTCTGAGCTGCCTGAGCCTGTTCTGGCACTTCCT GGACGTGGTGTGGATCTGCGTATTCACCGTTGTTTACCTGATGGGGACTCTGTAATGGCTAATGCACACTCCCATGACAGCCATGATGCTGGCCACGGCA GCGTAAAGTCGTACGCCATCGGCTTCATCCTGTCGGTGATCCTGACTGCCATCCCGTTCGGCCTGGTGATGTTTCCGACCTTGCCGAAGTCGACCACGCT GGCAATCGTCCTGCTGTTCGCGGTAATCCAGGTGATCGTTCACCTGTACTACTTCCTGCACCTGGACCGTTCGATTGCACAACGTAACAACGTGATCGCG TTTGTCTTTACGGCCATCGTGATCCTGCTGCTGGTTGGCCTGTCGCTGTGGATCATGTTCAGCATCCACACGTACATGATGGCGAAGTGAGGTAGACCCG
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| DNA Sequence for Gene |
>PMI25_000446
ATGTCGCTCAAGCACTTTATCCAAATCACCAAACCGGGGATCATTTTCGGTAACGTGCTTTCTGTGGCAGGCGGGTTCTTCCTGGCCTCGAAAGGGCATG TAGATCTGGCGGTGTTCCTGGCCGCCATGATCGGCACATCCCTGGTTGTGGCCTCCGGTTGCGTGTTCAACAACTGCATCGACCGCGACATCGACCTGAA GATGGAACGCACTAAAAACCGGGTGCTGGTGCAGGGCTTGATCTCCCTGAAACTGGCCCTGGTCTACGCGACCATCCTGGGTGTTCTCGGCGTTGCCTTG TTGTACAAGGTGGCCAACCCGTTGGCCGCCCTGTTCGCGGTAATCGGCTTCATCATCTACGTCGGCTTCTACAGCCTGTACCTCAAGCGCAAGTCGGTTC ACGGCACGCTGGTGGGCAGTCTGTCGGGCGCCATGCCGCCAGTGATCGGTTACGTTGCCGTCACCAACAGCTTCGACATGGCCGCACTGACCCTGCTGGT GATGTTCAGCCTGTGGCAGATGCCGCATTCCTACGCCATCGCGATCTTCCGTTTCAACGACTACCTGGCCGCATCGATTCCGGTGCTGCCCGTCAAGCGC GGAATCGAAGTGGCCAAGAAGCACATCCTGCTCTACATCCTGGCGTTCCTCGTGGCGACCTTGATGCTGACCTTCAGCGGTTACGCCGGCATGGGCTACC TCGCCGTCGCCGCGGCCATGGGCATGTACTGGCTGTACATGGCCTGGACCGGCTACAAGGCGGTGGATGACACGGTCTGGGCACGCAAGCTGTTCGTGTT CTCGATCTTCACCATCACCGCCCTGAGCGTCATGATGTCCCTGGACTTCAAGGTGCCGGCCGAGCTGCTGCTGACGTACGCGCCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTGGATGGCTTCACGAAAAACCCCGCACATTGAGAGATGTGCGGGGTTTTTTGTTGGGCCTGATTTAGGTAACTATCAAAGAATACTTCCAGCACTCA ATAATTTCTGCCAGTTGGGAAGGAGCCTTCTCCAAAGAGGGATATCTCCTACCGCCAGAAGATTTTTCTTTCGTTACGATCACTCGACATCTGGTTTTAT CGAGGCGCTGATAAATGGCAAAACGCGTTCTGTTTGACGAATTGATGCAAGGAATTCAGGAGATGGCTGCTGCGCGCAGAAAGGCTGGCGCTGCTACGGT GGCGGCAGGTTGCTATCAGTCAGTAAAAGACCTAGATTTGGATCCAACTATGCCGATGATCTACATCGAGTCGAATCCGCGATTTTCATCGGTCTTAACC TGCGATTTTTCATGCATTGATCAAAAGGCTGGGCGAAATGACTGAGAGGATGACCTGCGACGAACGCTTCATTGCCCTGGCACAAGAGCTGAACTACGAC
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MSLKHFIQITKPGIIFGNVLSVAGGFFLASKGHVDLAVFLAAMIGTSLVVASGCVFNNCIDRDIDLKMERTKNRVLVQGLISLKLALVYATILGVLGVAL LYKVANPLAALFAVIGFIIYVGFYSLYLKRKSVHGTLVGSLSGAMPPVIGYVAVTNSFDMAALTLLVMFSLWQMPHSYAIAIFRFNDYLAASIPVLPVKR GIEVAKKHILLYILAFLVATLMLTFSGYAGMGYLAVAAAMGMYWLYMAWTGYKAVDDTVWARKLFVFSIFTITALSVMMSLDFKVPAELLLTYAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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