Pseudomonas sp. GM30, PMI25_000055

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAGGTTCGCGGCCTACACGGGAATTCCTGGTTTCTTACACAATTTACGCACAGGTTTATCCACAGCTAGTACGTTGCAAGCCCTCTCGAAACGCATTAT CTTGTAGCACGGCGCGAGGAGAGACCCTACATATAGGGTTTTCCGCTCAGGCGACCAACCACATTTCGGACCTGAAACTCAAGCGCTTTATTGCCAGTTT CCGGTTGAACCAAGCAAGTTTTTCAAAGCCCAAACCGCACTTGCGGATGGCGCCGTTTTTCAGGTCGGAAACGACCGGAACGGTACGGGTGTTGCAGTCA TTACTGTCATCCGGGAAGGAATCCGGCTCGAGCCCTGGCTCGCAGCCAAAAACTTCGGCAAGGATGCGGCGTCATTAGCCTTTTTCCTACTGGTCCGAAG TTGTTATGCCCGACGCCCGTCGGTTGTAGTGCTTCGGACCAGAACGGTGAGCACCATGATGGTGCCCAAACAAACATAGAGAATGTGGAGATCACCCCCC
DNA Sequence for Gene
>PMI25_000055
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGGCACCTTGCCGCAGGCCGCCGATTCGAATTCGGATCTGGCCGCCACCGCGCCTGGTCAACTGCGCG TGATCAAGCGTAATGGCACTGTCGTTCCTTACACCGATGACAAGATCACCGTCGCTATCACCAAAGCGTTTCTCGCAGTTGAGGGCGGCACCGCTGCCGC TTCGTCGCGAATCCACGACACCGTTGCCCGCCTGACCGAACAGGTCACCGCGACTTTCAAGCGTCGCATGCCGTCGGGCGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTCGCTCGCGACTACGTGATCTACCGTGACGGCCGTTCGAAAGAACGCGCTG CCCACGCACCGGTGGAAGCCGCAGTCAACGCGCACCCGTCGATCCGCATCACCCGTGCCGACGGCAGCCTCGCGCCGCTGGACATGGGCCGCCTGAACAC CATCGTTACCGAAGCCTGCGAAGGCCTGGCTGAAGTCGATGGTGACCTGATCCAGCGCGAAACCCTGAAAAACCTGTACGACGGCGTGGCCCTGAACGAC GTCAACACCGCACTGGTGATGACCGCGCGTACGCTGGTTGAACGTGAGCCGAACTACTCGTTCGTCACCGCTCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGGGCTTCCTGGAAGTGGCCGAAAGCGCCACTCACCACGAAATGGCCGACCTGTACGCCAAGGCGCTGCCGGCTTACATCGCCAAAGGTATCGA GTTCGAACTGCTGAACCCTGTGCTGGCCACCTTCGACCTGGAAAAACTGGGCAAGGCGATCAACCACGAGCGCGATCAGCAATTCACCTACCTGGGCCTG CAGACCCTGTACGACCGTTACTTCATCCACAAGGATGGCGTGCGTTTCGAACTGCCGCAGATCTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCGAAG AGAAGCAGAAAGAAGACCGTGCGATCGAGTTCTACAACTTGCTGTCGTCCTTCGACTACATGGCTTCGACTCCGACCCTGTTCAACGCCGGTACCCTGCG TCCACAGCTGTCGAGCTGCTACCTGACCACCGTTCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGTTGTCCAAATTCGCTGGC GGCCTGGGCAACGACTGGACTCCGGTGCGTGCACTGGGTTCGTACATCAAGGGCACCAACGGCAAGTCGCAGGGCGTGGTTCCGTTCCTCAAAGTAGTGA ACGACACCGCCGTAGCCGTTAACCAGGGTGGCAAGCGCAAAGGCGCTGTGTGTGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAGCT GCGCAAGAACACCGGTGATGATCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGTGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCTTCCGAAGTGCCGGACCTGCACGACCTGACCGGTAAAGCCTTCGAAGAGCGTTACGAGTACTACGAAGCCCTGACCGAGTACC CGGGCAAGGTCAAGCTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAAATGCTGTCCATGCTGTTCGAAACCGGCCACCCGTGGCTGACTTTCAA AGACCCGTGCAACCTGCGTAGCCCGCAGCAGCACGTCGGCGTGGTTCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAGATC GCCGTTTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGCAACGCACCGTAAACACCGCCGTGCGCA TGCTCGACAACGTGATCGACATCAACTATTACTCGGTGCCGCAGGCGAAGAACTCCAACTTCCGCCACCGTCCGGTCGGCCTGGGCATCATGGGCTTCCA GGACGCGCTGTACCTGCAGCACATCCCTTACGGTTCCGACGCTGCCGTCGAGTTCGCCGACAAATCGATGGAAGCGGTCAGCTACTACGCGATCCAGGCG TCCTGCGACCTGGCTGACGAGCGCGGTGCGTACGAGACCTTCAACGGTTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCG AACAACGCGGCCAGAAGTACATCGACGTTGACCTGAACGAAACCCTGGACTGGGCACCGGTCCGCGCCCGTGTACAGAAAGGCATTCGTAACTCCAACAT CATGGCCATCGCACCGACCGCGACCATCGCCAACATCACCGGCGTATCGCAGTCGATCGAACCGACCTACCAGAACCTGTATGTGAAATCGAACCTGTCG GGCGAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTCAAGGCTCGCGGTCTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACGGTT CGGTTCAGCAGATCGAGCGCATCCCGCAAGAACTCAAAGAGCTCTACGCAACCGCGTTCGAAGTGGACACCAAGTGGATCGTTGACGCCGCCAGCCGTCG TCAGAAGTGGATCGACCAGGCCCAGTCGCTGAACCTGTACATCGCCGGCGCATCGGGCAAGAAGCTCGACGTGACCTACCGCATGGCCTGGTACCGTGGT CTGAAAACCACCTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGCAAGCTGAACGCTGTTTCCAGCGGCGGCAACC ACGGCGACGATTCGGTTCTGGCCGCTCCGGCAGGTCCGGCACCAGTGCCAAAGGCTTGTGCGATCGACGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCTGAGCCGGGTCAGGCGTCGCGAGACGCCTGATGCTTCCAGGCCAAAGAAAACCCCCGACAGACTTCTGGTTTGTCGGGGGTTTTCTTTTGTCCGCCAT TTATTTGTAGGAGCTGTCGAGTAGATCGCGGCCTTCGGCAGCTCCTACAGAGGATGAGTACATCTGGCAGGCCGCCATCGCTGGCAAGCCAGCTCCCACA TTGGGATTGGATGCGGTCAGTTAAAGATTGGTCGGCTGACAGGCCGCCATCGCCAGCAGGCTGAAAGCGTAGAGCCCATGCGGCAAAGCCGCCCCACTCA ATGGCCGAGTGTCAGCTCGCCGAAAGCTTTTGATCTTGCCGTACCGGCCCCGTCGGCAGGCTGAGTGGAGGGGTTTATCCGGGGGTGGGAGCGCAGCGAC CGTTTGGCGCAGCCAAACACATCGAGAGGAGGTGCAGCGAAGCAAACCGGAGGCGATGCGCCCGGATGAATCCCGCAACGAAGGAACCCGAGCCTAAGCG
Amino Acid Sequence
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQGTLPQAADSNSDLAATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDGRSKERAAHAPVEAAVNAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLIQRETLKNLYDGVALND VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLEVAESATHHEMADLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEI AVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQA SCDLADERGAYETFNGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLS GEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRG LKTTYYLRALAATSTEKSTINTGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site