Pseudomonas sp. GM30, PMI25_004985

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg21, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGGCCTGATGCAGCCGTGGCGCTTCATCCGCATCAGCGATCGCACCTTGCGCGGGCAGATTCAGCACCTCGTCGAAGAAGAGCGCATCCGCACCGCCG AGGCCCTCGGCGAGCGCAGCGATGAGTTCATGAAGCTCAAGGTCGAAGGCATCAATGATTGCGCCGAAGTGCTGGTCGCAGCGCTGATGGACGATCGCGA AAAACACATTTTCGGTCGTCGTACGCTGCCGGAAATGGACATGGCCTCGCTGTCCTGCGCGATCCAGAATTTGTGGCTGGCGTCCCGTGCCGAAGGACTG GGCATGGGCTGGGTGTCGTTGTTCGAACCACAGGCGCTGGCCGATCTGCTGCAACTGCCGGCCGGGGCCAAGCCGTTGGCGGTGTTGTGCCTGGGGCCGG TCAAGGCATTCTATCCGGCGCCGATGCTGGTACTCGAAGGGTGGGCGCAGGCGCAGCCGCTCAATGAGTTGCTGTACGAAAACTATTGGGGAGTGAATCA
DNA Sequence for Gene
>PMI25_004985
ATGAGTGTGGCGTTGTTGAGTGTCGCCGCGGTCGCGCTGGATGCGCTGCTGGGTGAACCGAAACGCTGGCATCCGCTGGTGGCGTTCGGCAATTTTGCCG GGCGCATCGAGCGCCGTTTCAATGCGGGCGGGCGCGGCTGGCGCAGTCACGGGGTCACCGCGTGGGTGATCGCGGTGCTGCCGCTGACCTTGCTCGCCAC CGCGTTTTCCTGGGCGCCGTACGTGGGCTGGATCGTCGAGATCCTTGCGTTGTATTGCGCCCTCGGCATGCGCAGCCTCGGTGAGCATGTCGCGCCGGTA GCCGCCGCCTTGCGCGCCGATGATCTGGAAGAAGCGCGCAAGCGTGTTGGCTATCTGGTCAGCCGCCAGACCAGCGAACTGGACAGCACCGCCGTCGCCC GTGCCGCCACCGAATCGGTGCTGGAGAACGGCAGTGACGCGGTGTTCGCCGCGCTGTTCTGGTTTGTCGTGGCCGGTGCGCCGGGCGTGGTGCTCTATCG CCTGAGCAATACCCTCGACGCGATGTGGGGCTATCGCAACGAACGCTTCGAGCGCTTCGGCTGGTGCGCGGCAAAGATCGACGACGTGCTCAACTACATT CCGGCGCGTTTGGTGGCGCTGACCTATGCGCTGCTGGGCAACACCCGGCTGGCCTGGAAATGCTGGCGCAGCCAGGGCCCGCAATGGGACAGCCCCAACG CCGGTCCGGTGATGGCGGCGGGTGCCGGTGCGTTGAATGTCGAACTGGGCGGCCCGGCGATCTATCACGGCGAACTGCATGAGCGTCCGCGACTGGGCGA AGGTCCGCCGGCGGATGCCGATTCGATTGATTGCGGCTGGCAATTGGTCCAGCGCGGGGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTC TATGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACGGTGGCCGGCTGCGCAAGGCTGCACTCGATTACGGCATCGCTGAGGCCGACTGGCTCGACCTGTCCAGCGGCCTCGCGCCGTGGCCGTTTACGGTG CCGGAAATTCCGTTGCGCGCCTGGGCACGTTTGCCGGAAACCGACGACGGGCTGGAACAGGCCGCGTGTGATTACTACGGCGCTTCGCAGGTGCTGCCGG TGGCCGGTTCGCAGATGGCGATCCAGTTGCTGCCGCGTTTGCGTCGCGCCGGCAAGGTCGGGGTGTTGTCGCCGTGTTATGCCGAGCACGCCGAAGCCTG GCGGCGCAGCGGTTACATCGTGCGCGAAGTGCTGGAGCAGGAAGTCGAATTCTTTCTCGACAGCCTCGACGTGCTGGTGGTGGTCAACCCGAACAACCCC ACTGGCCTGAGCCTGACCCCGGCGCGACTGCTCGACTGGCACGCGCGGCTGGCCCAGCGCGGCGGCTGGCTGGTGGTCGATGAAGCGTTCATGGACAACA
Amino Acid Sequence
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAGRIERRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYVGWIVEILALYCALGMRSLGEHVAPV AAALRADDLEEARKRVGYLVSRQTSELDSTAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWCAAKIDDVLNYI PARLVALTYALLGNTRLAWKCWRSQGPQWDSPNAGPVMAAGAGALNVELGGPAIYHGELHERPRLGEGPPADADSIDCGWQLVQRGVWLWLLILCVGAEF YA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site