Pseudomonas sp. GM30, PMI25_001001

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCGAACGCAGCACGTTCATCCCGATCCTGGCCAACAGCTTCGCCCGTCACACCACCGAAATCGTCGTCGCCCACGCCGAGCGTGAACACGGCGATTCGA AATACAGCCCGATGCGCCTGATCAACCTGATGTTTGATCTGGTCACCTGCATGACCACCACGCCGCTGCGTCTGCTGAGCATCGTCGGCTTCGCCATGGC CGGATTGGGCGTGCTGTTCGCCGTTGCGTTGATTGTCTTGCGTCTGGCCTTCGGTGCCGGTTGGGCCGGTGACGGCATGTTCGTGCTGTTCGCCGTACTG TTCGTGTTCACCGGTGGCCAGTTCATCGGCATGGGCCTGCTGGGTGAATATCTCGGCCGCATGTACAGCGATGTGCGCGCCCGTCCACGCTTCTTCATCG AAAAGGTGTTGCGCAGCCAGCCGGCCGCTCCGGCCCCTGCCGTCACCGTTGATGGTCTTTCTTCTACCGCTACTTCTTCCACTTCCGATCAGGTTCTCTC
DNA Sequence for Gene
>PMI25_001001
ATGAGTGCAAAAACTGTTGTCTTCGCCTACCACGATATTGGCTGCGCCGGCATTGAAGCCCTGCTCAACAGCGGCTATGACATTGCAGCAGTGTTCACTC ACGCCGATGATCCGAAAGAAAACGCGTTCTATGCCTCGGTTGCACAGCTGTGCGCCAACAAAGGCATCCCGGTGCACGCCCCGGAAGACGCCAACCACCC GCTGTGGATCGAGCGCATCGCCAAGCTGGACCCGGAGTACATTTTCTCCTTCTACTACCGCAACCTGCTGAGCGAGCCACTGCTGGCCCTGGCCAAAAAA GGCGCGTTCAACCTGCACGGTTCGCTGCTGCCACGCTATCGCGGTCGCGCACCGGCAAACTGGGTGCTGGTCAATGGCGAAACCGAAACCGGCGTCACCC TGCACCGCATGGTCAAGCGCGCGGATACCGGCGCCATCGTTGCCCAGCAGCGCGTTGCCATCGACCGCAGCGACACCGGCCTGACCCTGCACGCCAAACT GCGCACCGCCGCCAGCGACCTGCTGCGCGACACCCTGCCGAACATGCTGCAAGGCAAGATCACTGAAACCCCGCAAGACGAATCGAAGGCCACCGTGTTC GGTCGCCGTACTCCGGCGGACGGCAAACTGGTCTGGGCCAAACCGGCCGAAGAACTGTTCAACCTGGTGCGCGCCGTCACCCGTCCTTACCCGGGCGCGT TTTGCGCCGTGGGCGAGCACAAACTGATCGTCTGGAGCGCCGAAGTCGTCAAGGGCAACGAAGGCCAGGCGCCAGGCCGCGTGATCAGCGTCGATCCGCT GCGCATTGCCTGCGGTCAGGACTCGCTGGTGATCAACGCCGGTCAGCGCAACGACAACGGTCTGTACCTCAGCGGCCCGCAACTGGCCAACGAGTTGGGT CTGGTTGACGGCTCGCTGCTGCGCGGTGCCGAATCCGGTCGTGCGCCACGTCGTACTCGCGTACTGATTCTGGGCGTCAACGGCTTCATCGGTAACCACC TGTCCGAGCGCCTGCTGCGTGACGACCGCTACGAAGTCTACGGTCTGGACATCGGCTCCGACGCCATCGACCGTCTGCGCAGTCACCCGAACTTCCACTT CGTCGAGGGTGACATCAGCATTCACTCCGAGTGGATCGAGTACCACATCAAGAAGTGCGACGTGGTCCTGCCGCTGGTGGCCATCGCCACCCCGATCGAA TACACCCGCAACCCGCTGCGCGTATTCGAGCTGGACTTCGAAGAGAACCTGAAACTGGTTCGCTACTGCGTCAAGTACAACAAGCGCGTGATTTTCCCGT CGACCTCGGAAGTCTATGGCATGTGCCAGGACAAGAACTTCGACGAAGACAGCTCGAACCTGATCGTCGGCCCGATCAACAAGCAGCGCTGGATCTACTC GGTCTCCAAACAACTGCTGGACCGCGTGATCTGGGCTTACGGCGCCAAGGGCCTGAACTTCACCCTGTTCCGTCCGTTCAACTGGATGGGCCCGCGTCTG GATCGTCTGGATTCGGCGCGTATCGGCAGCTCCCGCGCCATCACCCAGTTGATCCTCAACCTGGTGGAAGGCACACCGATCCGTCTGTTCGACGGTGGCG AGCAGAAGCGTTGCTTCACCGACATCGCTGACGGCGTCGAGGCACTGGCGCGCATCATCGATAACGACAACGACGTGTGCAACGGCCAGATCATCAACAT CGGCAACCCGGACAACGAAGCCAGCATCCGTCAGTTGGGCGAAGAGCTGCTGCGTCAGTTCGAAGCGCACCCGCTGCGCCACAACTTCCCGCCGTTCGCC GGTTTCCGCGACGTGGAAAGCAAGGCGTTCTACGGTGCCGGTTACCAGGACGTGGAACACCGCAAACCAAGCATTGCCAACGCCAAGCGCCTGCTGAACT GGGAGCCGACCGTGGAAATGCGCGAGACCATCGGCAACACCCTGGACTTCTTCCTGCGTGAAGCCATGCTCGAAATCGCGGACAAGAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGCAGGCAGGTCTTCGTATCGATGTCGACACCTACCGCGGCACCCGTGAAGGTGTGCCGCGACTGTTGGAGATGCTCGACGAGGCGCAGGTCAAGGCAAC GTTTTTCTTCAGTGTCGGCCCGGACAACATGGGCCGGCATCTGTGGCGCCTGATCCGCCCGCAGTTCCTCTGGAAAATGCTGCGCTCCAACGCTGCCGGC CTCTACGGCTGGGACATTTTGCTGGCCGGCACTGCCTGGCCCGGCAAACCGATTGGCCGTGATCTCGGGCACCTGATGCGTCAGGCCCGGGACGCCGGTC ACGAAGTCGGCCTGCACGCCTGGGATCACCATGGCTGGCAGGCCAACGCCGGGCGCTGGAGCGACGCGCAACTGATCGAACAGATCCGGCGCGGCGTCGA CACCTTGAGCGACATCCTCGGCGAAAAGATCCAGTGTTCGGCCGCCGCCGGCTGGCGTGCGGACGAGCGCGTGATCGAGGCCAAGCAGACCTTCGGCTTT
Amino Acid Sequence
>bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSAKTVVFAYHDIGCAGIEALLNSGYDIAAVFTHADDPKENAFYASVAQLCANKGIPVHAPEDANHPLWIERIAKLDPEYIFSFYYRNLLSEPLLALAKK GAFNLHGSLLPRYRGRAPANWVLVNGETETGVTLHRMVKRADTGAIVAQQRVAIDRSDTGLTLHAKLRTAASDLLRDTLPNMLQGKITETPQDESKATVF GRRTPADGKLVWAKPAEELFNLVRAVTRPYPGAFCAVGEHKLIVWSAEVVKGNEGQAPGRVISVDPLRIACGQDSLVINAGQRNDNGLYLSGPQLANELG LVDGSLLRGAESGRAPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIDRLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIE YTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKNFDEDSSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTLFRPFNWMGPRL DRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRHNFPPFA GFRDVESKAFYGAGYQDVEHRKPSIANAKRLLNWEPTVEMRETIGNTLDFFLREAMLEIADKK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site