Strain | Pseudomonas sp. GM30 ctg3, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CGCGAACGCAGCACGTTCATCCCGATCCTGGCCAACAGCTTCGCCCGTCACACCACCGAAATCGTCGTCGCCCACGCCGAGCGTGAACACGGCGATTCGA AATACAGCCCGATGCGCCTGATCAACCTGATGTTTGATCTGGTCACCTGCATGACCACCACGCCGCTGCGTCTGCTGAGCATCGTCGGCTTCGCCATGGC CGGATTGGGCGTGCTGTTCGCCGTTGCGTTGATTGTCTTGCGTCTGGCCTTCGGTGCCGGTTGGGCCGGTGACGGCATGTTCGTGCTGTTCGCCGTACTG TTCGTGTTCACCGGTGGCCAGTTCATCGGCATGGGCCTGCTGGGTGAATATCTCGGCCGCATGTACAGCGATGTGCGCGCCCGTCCACGCTTCTTCATCG AAAAGGTGTTGCGCAGCCAGCCGGCCGCTCCGGCCCCTGCCGTCACCGTTGATGGTCTTTCTTCTACCGCTACTTCTTCCACTTCCGATCAGGTTCTCTC
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DNA Sequence for Gene |
>PMI25_001001
ATGAGTGCAAAAACTGTTGTCTTCGCCTACCACGATATTGGCTGCGCCGGCATTGAAGCCCTGCTCAACAGCGGCTATGACATTGCAGCAGTGTTCACTC ACGCCGATGATCCGAAAGAAAACGCGTTCTATGCCTCGGTTGCACAGCTGTGCGCCAACAAAGGCATCCCGGTGCACGCCCCGGAAGACGCCAACCACCC GCTGTGGATCGAGCGCATCGCCAAGCTGGACCCGGAGTACATTTTCTCCTTCTACTACCGCAACCTGCTGAGCGAGCCACTGCTGGCCCTGGCCAAAAAA GGCGCGTTCAACCTGCACGGTTCGCTGCTGCCACGCTATCGCGGTCGCGCACCGGCAAACTGGGTGCTGGTCAATGGCGAAACCGAAACCGGCGTCACCC TGCACCGCATGGTCAAGCGCGCGGATACCGGCGCCATCGTTGCCCAGCAGCGCGTTGCCATCGACCGCAGCGACACCGGCCTGACCCTGCACGCCAAACT GCGCACCGCCGCCAGCGACCTGCTGCGCGACACCCTGCCGAACATGCTGCAAGGCAAGATCACTGAAACCCCGCAAGACGAATCGAAGGCCACCGTGTTC GGTCGCCGTACTCCGGCGGACGGCAAACTGGTCTGGGCCAAACCGGCCGAAGAACTGTTCAACCTGGTGCGCGCCGTCACCCGTCCTTACCCGGGCGCGT TTTGCGCCGTGGGCGAGCACAAACTGATCGTCTGGAGCGCCGAAGTCGTCAAGGGCAACGAAGGCCAGGCGCCAGGCCGCGTGATCAGCGTCGATCCGCT GCGCATTGCCTGCGGTCAGGACTCGCTGGTGATCAACGCCGGTCAGCGCAACGACAACGGTCTGTACCTCAGCGGCCCGCAACTGGCCAACGAGTTGGGT CTGGTTGACGGCTCGCTGCTGCGCGGTGCCGAATCCGGTCGTGCGCCACGTCGTACTCGCGTACTGATTCTGGGCGTCAACGGCTTCATCGGTAACCACC TGTCCGAGCGCCTGCTGCGTGACGACCGCTACGAAGTCTACGGTCTGGACATCGGCTCCGACGCCATCGACCGTCTGCGCAGTCACCCGAACTTCCACTT CGTCGAGGGTGACATCAGCATTCACTCCGAGTGGATCGAGTACCACATCAAGAAGTGCGACGTGGTCCTGCCGCTGGTGGCCATCGCCACCCCGATCGAA TACACCCGCAACCCGCTGCGCGTATTCGAGCTGGACTTCGAAGAGAACCTGAAACTGGTTCGCTACTGCGTCAAGTACAACAAGCGCGTGATTTTCCCGT CGACCTCGGAAGTCTATGGCATGTGCCAGGACAAGAACTTCGACGAAGACAGCTCGAACCTGATCGTCGGCCCGATCAACAAGCAGCGCTGGATCTACTC GGTCTCCAAACAACTGCTGGACCGCGTGATCTGGGCTTACGGCGCCAAGGGCCTGAACTTCACCCTGTTCCGTCCGTTCAACTGGATGGGCCCGCGTCTG GATCGTCTGGATTCGGCGCGTATCGGCAGCTCCCGCGCCATCACCCAGTTGATCCTCAACCTGGTGGAAGGCACACCGATCCGTCTGTTCGACGGTGGCG AGCAGAAGCGTTGCTTCACCGACATCGCTGACGGCGTCGAGGCACTGGCGCGCATCATCGATAACGACAACGACGTGTGCAACGGCCAGATCATCAACAT CGGCAACCCGGACAACGAAGCCAGCATCCGTCAGTTGGGCGAAGAGCTGCTGCGTCAGTTCGAAGCGCACCCGCTGCGCCACAACTTCCCGCCGTTCGCC GGTTTCCGCGACGTGGAAAGCAAGGCGTTCTACGGTGCCGGTTACCAGGACGTGGAACACCGCAAACCAAGCATTGCCAACGCCAAGCGCCTGCTGAACT GGGAGCCGACCGTGGAAATGCGCGAGACCATCGGCAACACCCTGGACTTCTTCCTGCGTGAAGCCATGCTCGAAATCGCGGACAAGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGCAGGCAGGTCTTCGTATCGATGTCGACACCTACCGCGGCACCCGTGAAGGTGTGCCGCGACTGTTGGAGATGCTCGACGAGGCGCAGGTCAAGGCAAC GTTTTTCTTCAGTGTCGGCCCGGACAACATGGGCCGGCATCTGTGGCGCCTGATCCGCCCGCAGTTCCTCTGGAAAATGCTGCGCTCCAACGCTGCCGGC CTCTACGGCTGGGACATTTTGCTGGCCGGCACTGCCTGGCCCGGCAAACCGATTGGCCGTGATCTCGGGCACCTGATGCGTCAGGCCCGGGACGCCGGTC ACGAAGTCGGCCTGCACGCCTGGGATCACCATGGCTGGCAGGCCAACGCCGGGCGCTGGAGCGACGCGCAACTGATCGAACAGATCCGGCGCGGCGTCGA CACCTTGAGCGACATCCTCGGCGAAAAGATCCAGTGTTCGGCCGCCGCCGGCTGGCGTGCGGACGAGCGCGTGATCGAGGCCAAGCAGACCTTCGGCTTT
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Amino Acid Sequence |
>bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSAKTVVFAYHDIGCAGIEALLNSGYDIAAVFTHADDPKENAFYASVAQLCANKGIPVHAPEDANHPLWIERIAKLDPEYIFSFYYRNLLSEPLLALAKK GAFNLHGSLLPRYRGRAPANWVLVNGETETGVTLHRMVKRADTGAIVAQQRVAIDRSDTGLTLHAKLRTAASDLLRDTLPNMLQGKITETPQDESKATVF GRRTPADGKLVWAKPAEELFNLVRAVTRPYPGAFCAVGEHKLIVWSAEVVKGNEGQAPGRVISVDPLRIACGQDSLVINAGQRNDNGLYLSGPQLANELG LVDGSLLRGAESGRAPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIDRLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIE YTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKNFDEDSSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTLFRPFNWMGPRL DRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRHNFPPFA GFRDVESKAFYGAGYQDVEHRKPSIANAKRLLNWEPTVEMRETIGNTLDFFLREAMLEIADKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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