Pseudomonas sp. GM30, PMI25_000986

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCAGTCGCCGATGTGCTGGTTCGGCGGTTACCAAGGCGTGCCGACCAAAGCTTTCGTCGGCGATTACTACCTCAGCGGCGACACTGTGGAGTGGAACCC GGACGGCAGCATCAGCTTCGTCGGCCGCAGCGACGATGTGATCACCACCTCCGGTTATCGCGTCGGCCCGTTCGACGTCGAAAGCGCGCTGATCGAACAC CCGGCGGTGGTCGAAGCCGCCGTGGTCGGCAAGCCGGATCCGGAGCGCACCGAACTGGTCAAGGCCTTCGTCGTGCTCAACCCGCAATACCGCGCCGAAC CGGCGCTGGCCGAAGAGTTGCGGCAACACGTGCGCAAGCGTCTGGCCGCGCATTCGTACCCGCGGGAAATCGAATTTGTCAGCGAATTGCCGAAAACCCC AAGCGGCAAATTGCAGCGCTTTATCTTGCGCAACCAGGAAATCGCCAAGGCTCAAGAGGCCGCGGTGCACAACGTTTCAGCTTGAATCAGGAAGTCAGTC
DNA Sequence for Gene
>PMI25_000986
ATGCAGATCGAGAACAAGGTTTTTATCGTCACCGGCGGCGCCTCTGGGCTCGGTGCGGCCACCGCGGAATTGCTGGTCAGCGCCGGCGCCAAAGTGATGC TGGTGGACATGAACGCCGAAGCGGTAGCCGCCCAGGCGCAGCGACTCGGCGCGCAAAGCGTGGTGGCCGACATCAGCAACGAAGCCGCCGCCGAAGCTGC GGTGCAGGCCACGCTCAAAGCCTTTGGCAGTCTCAATGGCCTGGTCAATTGTGCCGGCATCGTTCGCGGCGAGAAGATCCTCGGCAAGAACGGCCCGCAT GCACTGTCCAGCTTCGCTCAGGTGATCAACGTCAACCTGATCGGTAGCTTCAACATGCTGCGCCTTGCAGCAGCCGCGATTGCCGAGAGCGAAGCCAATG CCGACGGCGAGCGCGGGGTGATCATCAACACCGCCTCGGTCGCTGCGTTCGACGGCCAGATCGGTCAGGCGGCGTATTCCGCCTCCAAAGGCGCCATCGC CAGCCTGACCCTGCCGGCCGCCCGCGAACTGGCGCGTTTCGGTATCCGCGTGATGACCATCGCCCCGGGCATTTTCGAAACCCCGATGATGGCCGGCATG ACCCCGGAAGTGCGCGACTCGCTGGCCGCCGGCGTACCGTTCCCGCCACGCCTTGGGAAACCTGCCGAGTACGCCACGCTGGTTAGGCATATCATCGAAA ACAGCATGCTCAACGGTGAGGTGATCCGTCTCGACGGCGCCTTGCGCATGGCCGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGAGGATTTGTCATGACCATTTCCAACGATCCGATTGTTATCGTCAGCGCCGTCCGCACGCCGATGGGCGGTTTTCAGGGCGAACTGAAAAGCCTCACCG CGCCGCAACTCGGCGCCGCCGCGATCAAGGCTGCAGTTGAACGCGCCGGCATTGCCAGCGACGCGGTTGATGAAGTGTTGTTCGGTTGCGTATTGCCCGC CGGCCTCGGTCAGGCACCGGCGCGGCAGGCGGCTCTGGGCGCCGGGCTGGATAAATCCACCCGTTGCACCACGGTCAACAAGATGTGCGGCTCGGGCATG GAAACCACCATTCTGGCCCACGACATGCTGCTGGCCGGCAGCGCCGATGTGGTGATCGCCGGCGGCATGGAAAGCATGTCCAACTCGCCGTATCTGCTGG ACCGTGCACGCGCCGGTTACCGCATGGGCCATGGCCGGGTGCTCGACTCGATGTTCCTCGACGGCCTCGAAGACGCCTACGACAAGGGCCGCCTGATGGG
Amino Acid Sequence
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIENKVFIVTGGASGLGAATAELLVSAGAKVMLVDMNAEAVAAQAQRLGAQSVVADISNEAAAEAAVQATLKAFGSLNGLVNCAGIVRGEKILGKNGPH ALSSFAQVINVNLIGSFNMLRLAAAAIAESEANADGERGVIINTASVAAFDGQIGQAAYSASKGAIASLTLPAARELARFGIRVMTIAPGIFETPMMAGM TPEVRDSLAAGVPFPPRLGKPAEYATLVRHIIENSMLNGEVIRLDGALRMAAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site