Pseudomonas sp. GM30, PMI25_002330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTTGCCCGCTTCGATGCCGATCTGGCCCTGTCGGTGGCGCAGTACGACAAGGTCATCGACCGCGAATACAAGACCGCGCTGCGCGAGCTGGCGACCTAC ATGATGGAAGACCCGCGCTCTATCTCGCGGGTTCTGAGCATTATCTGGGTGCTGCGTTCGCTGGAGCGCATCGGCGACCACGCGCGCAACATCTCGGAGC TGGTGATTTACCTGGTGCGCGGCACCGATGTGCGCCACCTGGGCCTCAAACGCATGAAAGAAGAAGTTCAAGGCACAAGCGGCGAAACCGCTAATGTTCC GGGCGATGCTGACGATAAGTAAGATTGCCTGAGAAAAGCGCCCGGCCCTTTGGCCGGGCGTTTTTGTTTATGGTGCTTGAACAGCGAATCGAATTAAAAA GCAGCACCCGCGAACGAAAAGTCCCGGCGTGACTGAAGATTGTTGGCAATGTGCCATCAGCAAAGCGGTATGCTTGCCGGGATTTTTATAGGGGTGTTGG
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| DNA Sequence for Gene |
>PMI25_002330
ATGAGCAAGATCAGTGTGTTGGTCGTGGACGATGCTTCGTTCATTCGCGACCTGGTGAAAAAATGCCTGCGTAACTATTTCCCGGGGATCCGCACCGAGG ATGCCATCAACGGCAAAAAGGCCCAGGCCATGCTGGCCAAAGAAGCGTTCGACCTGGTCCTGTGCGATTGGGAAATGCCGGAAATGTCCGGTCTTGAGCT GCTGACCTGGTGCCGTCAGCAAGACAATCTCAAGTCGATGCCATTCATCATGGTCACCAGCCGTGGCGATAAAGAGAACGTGGTGCAGGCGATCCAGGCC GGGGTTTCCGGCTACGTCAGCAAGCCGTTCACCAACGAACAACTGCTGACCAAGGTCAAGCAGGCGCTGAACAAGGTTGGCAAGCTCGACGCCCTGATGA ACAGCGCGCCAACCAAGATGAACTCGGCGTTCGGCAACGATTCCCTGAGCGCATTGACCGGTGGCAAGGCTGCCGTGGTCGGCGCTGCGCCAGCGGCGGC TGCGGTCAATCCGTTCGCCAAGCCTGCTGCAGCTGCTGCGGCGCCTGCTGCTGCGCCGTCCCGTGGCTTGCTCAACAGTCCGCCGGTGCAGGCACCGGCT GCCTCCAAAGCGCCGGTCGGCGGTCGTGGTCAGGGTCAGTTGCGCCTGCCGAGTGGCACCCAGCAATGCGTGATCAAGGCCCTGAGCATCAAGGAGGCGC TGCTGGTGGTGAAGCGCACAGAAACCCTGCCGCAGATCCTCGACAGCGCCGTGCTCGATCTGGAGCAGGGCGACAACGCGGAAATCGCCCGCCTCAACGG CTACCTGCACGCTATCGTTGCCCACGAACAGAAAGCCGACAGCGACTGGCTGCAACTGACCTTCCGCTTCGTCGATCAGGACGCACAGAAGCTCGACTAC ATCTCCCGCCTGATCGCCCGTGGCACGGCGCAGAAGCACTTCGTTCCGGGCGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGCATCGAAAAAGATCGCAGCCTTCGGCAGCTCCTACAGGATCGCATTCCAATGTAGGAGCTGCCGCAGGCTGCGATCTTTTGCTTTGTGCGCTGC CCAATTTGAAACATCTGTCGACTAGCCTGGTCTGTCTCAGCTGCTAGGCTCATTTCCAGGCCTTACTTCGACAGACTCTTGCCCATGCTCGCGCGCCTGC TGTTTTTCTGTGGTCTTTTCCTGGCCTCCGCCTCGGCTGTGGCCATGACCATCTACAAATCCACCGATGCCAACGGCGTGGTCTCGTACAGCGACCGGCC GAGCAAAGGCTCGCAGGTGTTCGTGTTTCAGGACCGCATGGTCGAGCACCTGGAGCGCCAGGTGTACCTCGATATCAAGAAGCAGAAGGGCAGCGACGTG GTGTTCGTGCGCAACGATCTGTATGCGCCGGTCGAAATTGCGCTGGCGTTTACCGGCCTGAGCAATGTGCGTGGCGCTCCGGCGCAGACGATTCGCCGGG
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| Amino Acid Sequence |
>chemotaxis protein CheY
MSKISVLVVDDASFIRDLVKKCLRNYFPGIRTEDAINGKKAQAMLAKEAFDLVLCDWEMPEMSGLELLTWCRQQDNLKSMPFIMVTSRGDKENVVQAIQA GVSGYVSKPFTNEQLLTKVKQALNKVGKLDALMNSAPTKMNSAFGNDSLSALTGGKAAVVGAAPAAAAVNPFAKPAAAAAAPAAAPSRGLLNSPPVQAPA ASKAPVGGRGQGQLRLPSGTQQCVIKALSIKEALLVVKRTETLPQILDSAVLDLEQGDNAEIARLNGYLHAIVAHEQKADSDWLQLTFRFVDQDAQKLDY ISRLIARGTAQKHFVPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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