Pseudomonas sp. GM30, PMI25_002210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTTCCACCAAGGAAGGCATCCTCAGCGTCATCAAGGAAGTGCGCAAAGGTGGTGCAGTGGGCATTCCCGCTGACCCGGAACCGGCCGAATCCGCCGGG ATTTTCGTGCCGTTCTTCGCCACTCAGGCGCTGACCAGCAAATTCGTGCCGAACATGCTCGCCGGCGGCAAAGCGGTCGGGGTGTTCCTGCATGCCCTGC GCCTGCCGGACGGTTCCGGCTACAAAGTGATCCTCGAAGCGGCGCCAGAAGCCATGTACAGCACCGATACCGAGGAATCCTGCGCGGCCATGAGCAAAGT GGTCGAACGCTACGTTGCCGCCTATCCAAGCCAATACATGTGGAGCATGAAGCGCTTCAAGAAACGCCCACCGGGCGAAGCGCGCTGGTACTGAGCAAGT TGGCACACTCTGTGGATAACCTGTAGGAACTGCCGCAGGCTGTGATCTTTTGATCTTGCTTGAGGTTATCCACAACCCGTTCACTCAAGGGCGCATAAAG
|
|
| DNA Sequence for Gene |
>PMI25_002210
ATGTCCGAACAACGCAAATCCTTCCGCATCAAGATCACCCACGACAGCTTCGGCGAATGCCTGGGGCAGACGCGCAATCTGTCGGCCACCGGCGTCTATG TGCAGCATCCGCGTCTGGCGTCATTGCCCAAGGGTGCAGTGGTTTATGGCCAGGTGCAGGATTTACCCACCGGCGCGCCACGGGTGCGGATGGAAGTGGT GACGGTGGACGCCGAGGGCATCGGCCTGCGTTATCTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTTATTGCGCCTGACGGTCGAGCTTTTTCAGAAACACTGTCATTTCCTTTTCAGCCTGCTTGTCGCCATGGGCGCGGGCGGCCTCCAGTCCCTGTTCCCA CGCCTGCCGGGCGGCGGCATGTTCGCCCAATGCCAGTTGCGCCTTGCCCAATAGCTTCCACGCCGCCGAGTACTTCGGATCGAAGCCGACGCAGCGCTGA AAATGCTCGGCGGCCTTGGCGTTCTCCCCCAGATCCAGATAACCCTTGCCCAGACCGAAGCGCAGCAACGAGTTATCCACACCCTTGGCGAGCATTTTTT CCAGGGATTCGAGCATTGGTGGAGTCCTTTTCTAGTGCGTCAGAAAGATCTGCGGTGCCGCCATCGCTTGCAAGCCAGCTCCCACAAGGACCTCGGGTGC ACATCATATTTGTGAATAACCGAAAAACCTGTGGGAGCTGGCTTGCCAGCGATGGGGCCAATGAAGGCACCGCTTATTCAGGTTCAGAAGAAGCTGAGAC
|
|
| Amino Acid Sequence |
>pilus protein PilZ
MSEQRKSFRIKITHDSFGECLGQTRNLSATGVYVQHPRLASLPKGAVVYGQVQDLPTGAPRVRMEVVTVDAEGIGLRYL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|