Pseudomonas sp. GM30, PMI25_002590
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTTCACGCATAAGGGCTACATCGACATCTTCGACGGTGGCCCGGTGATCGAGGCGCCGATCGGCAGCATTCGTACCGTGCGCGACAGCCTGGCGCTGA CCCTGAGCCTCGGCACACCGGACGATCAGGCACCGTTGTGGCTGATCCATAACCGGCGCCTGGAGAACTGCCGCATCACCGTGGCCCCCGGTCGTCTGGT CGGCAATAGCCTGGTGGTCGATCGCCTCACCGCCAAGCGCTTGCAGTTGCAACCGGGCAATTCGGTACGCGCGGTGCTGCTGCCCAGGCAACAGCAACAG GCGGTAGCCGCCTGATCCGCGGTTTTGCCAGTGAAAATCCGCTGACTGCCGATGAAACCTTTCAGCCGCTGGATCCTTCATCAACGCCTCACTCGCAAAT TCGTCATGAACCTTGACCCATTCGCGTGATAGCCTTTTCATTCTTCGGCGTTGACACCTTTGCTCAAGCCGTTCCATTCCTTTGTATTGGTGGAACTCGT
|
|
| DNA Sequence for Gene |
>PMI25_002590
ATGACCAGGCTTTCCCATCAAGATTTGCGCCGTAACTTCCGTCAATTGCTGGCTTCCGACACCTGCTACCACACCGCCTCGGTGTTCGACCCGATGTCCG CGCGCATTGCCGCCGACCTGGGTTTTGAAGTGGGGATCCTCGGCGGCTCCGTGGCCTCATTGCAGGTGCTCGGCGCCCCCGACTTTGCCCTGATCACCCT CAGCGAGTTCGCCGAACAGGCCACCCGCATCGGCCGCGTCGCCCAACTGCCAGTGATCGCCGACGCCGACCACGGCTACGGCAACGCCCTCAACGTGATG CGCACCATCGTTGAACTGGAACGCGCCGGCGTCGCCGCCCTGACCATCGAAGACACCCTGCTGCCGGCGCAATTCGGCCGCAAATCCACAGACCTGATTT CGGTCGCTGAAGGCGTCGGCAAGATCCGCGCGGCGCTGGAAGCCCGGGTCGATTCGGAAATGGCAATCATCGCCCGCACCAACGCCGGGATCCTGCCGAA TCAGGAAATCATCAGCCGCACCAAGCAATACCAGGCCGCTGGTGCCGATGGCATCTGCATGGTCGGGGTGCAGGACTTCGATCAGCTCGAGCAAATCGCC GAACACCTGACGGTGCCGCTGATGCTGGTCACCTACGGCAACCCTGCGCTGCGCGACGACAAGCGCCTGGCCGAACTCGGCGTACGCGTGACCATCGACG GCCATGGCGCGTACTTCGCGGCGATCAAGGCCACCTACGACAGCCTGCGCGAACAACGCCAGATCTTCACCCAGGCCTCGGACCTGAGCGCCACCGAACT GACGCACACCTATACCCAGCCTGAGGATTACATTCTCTGGGCGAAGGAATACATGAGCGTCAAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGCGGTCAGGACTGGCCTCTTCGCGAGCAGGCTCGCTCCCACAGTGGATCTTCAGTGAACACAGTATTGGTGTTGAACACAGATCCCATGTAGGAGTG AGCCTGCTCGCGATGACGTCGGCACATTCAACATCCATTTAGCCTGACCCGCCGCCTTCGCGAGCAAGCTCGCTCCCACAGTGGATCTTCAGTGAACACA GCAATGGTGTTGAACACAGATCCCATGTAGGAGTGAGCCTGCTCGCGATGATGTCGGCACATTCAACACCCATTTAGCCTGACCCGCCGCCTTCGCGAGC AAGCTCGCTCCCACAGTGGGTCTTCAGTGAACACAGCATTGGTGTTCGGCACAGATCCCATGTAGGAGTGAGCCTGCTCGCGATGACGTCGGCACATTCA ACATCCATTTAGCCTGACCCGCCGCCTTCGCGAGCAAGCTCGCTCCCCCAGTGGATCTTCAGTGAACACAGCATTGGTGTTCGGCACAGATCCATTGTGG
|
|
| Amino Acid Sequence |
>oxaloacetate decarboxylase
MTRLSHQDLRRNFRQLLASDTCYHTASVFDPMSARIAADLGFEVGILGGSVASLQVLGAPDFALITLSEFAEQATRIGRVAQLPVIADADHGYGNALNVM RTIVELERAGVAALTIEDTLLPAQFGRKSTDLISVAEGVGKIRAALEARVDSEMAIIARTNAGILPNQEIISRTKQYQAAGADGICMVGVQDFDQLEQIA EHLTVPLMLVTYGNPALRDDKRLAELGVRVTIDGHGAYFAAIKATYDSLREQRQIFTQASDLSATELTHTYTQPEDYILWAKEYMSVKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|