Pseudomonas sp. GM30, PMI25_002879
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATAGTAGGCACCATTGGCGAAAATGCTCAAGGTGCGCTCGTCATCATGCTGGTTGACCGGGTGACTCCGATGGACGCAGCGGCGAGAGCAGGGAGGATC TTCCCGAAGCGCTCACCGGAACATTGCCGAATGTCGAGACTTAAGACGCGGGCGCTTCTTTAAAGTCACCTCAAGAGTGACAAAGATATGTGAGGCGTCA TGCAAAATCGGAACAAAAGTGTAGACGAATTCATCTAGGCAGACTTGGTGCAACACGCAGAAACAGCACCGGGCAGCGGGAACTTTTTCTCATTAACACG CTCAGGCCGGGGCTTGCAGCTGGATATTTTTTATACAGCCCAGTTAAAAGTTGCTCGAAAAAGAATCAACGCCTACAATTTTTTTTGCTTCTTGCGCTCC GTCAGTTTACTTACTACAAGTAATGGGTAGTATGTACGCCGGCTATTTCCTCAATCGGAGGAGAAAGCCACTTAATTGAAAGTCCTTGAAGGGGAACACG
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| DNA Sequence for Gene |
>PMI25_002879
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGCATCGAAAGAAACCGAAGCACGTCTGACCGCTA CTGAAGACGCAGCTGCTCGCTCCCAAGCTCGTGCAGACGAAGCTTACCGTAAAGCTGATGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA CGAAGCTAACGAGCGTGCTCTGCGCATGCTGGACAAAGCTAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATCCCTCGGGATTGTTATCAAGCCGACCCATTTTTTGGGTCGGCTTTTTTATTGCCGGCAGCTTTGTCCAGGCAATAAAAAACCGCCGACGCTTAAGC ATCGGCGGGTCCGGATCGCGCTTACTGTTGCAAGTCGATCGGTGTGCTCGAAACCATCGGCGCCGAGGTATTCGGCGTGCCGATTTCAGTTGGCAGGCCA TCTTCGGCCGCCACTACGTCACGCACCACATCCCAGTTCACGCGCAGATTGTTGGTGACATCTTCACGCTTGAGCATCGCGTTGATCACCGCTGTGTGCT TGTCGACCACCGACGGGTTGCCCTTGTCATCGATTGGCGTGTGCGCTTCGAGATACACCTTGCCGCCACTGCTGCCGAACTTGTACGCATCGTTGAGAAT GCGCACCGAAGTGCCGACCGGCACCATGGCCGCCATTTCCAGCACGTTGTTATTGAACATGCGGAAGCAACCGTGGCTGGTGCGCATGCCAATACCGAAC
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| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSASKETEARLTATEDAAARSQARADEAYRKADEALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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