Pseudomonas sp. GM30, PMI25_003191
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM30 ctg9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTCGGCGTGCTGTATGAAAGCTACATTCACCCGCTGACCATTCTCTCGACCTTGCCCTCGGCCGGGGTCGGCGCGTTGCTGTCGATCTATGCGC TGGGCGGCGAGTTTAGCCTGATCTCCCTGCTCGGATTGTTCCTGCTGATCGGGGTGGTGAAGAAAAACGCGATCCTGATGATCGACCTGGCGCTGCAACT GGAACGCCATCAGGGCCTGTCGCCGCTGGAGTCGATCCGTAGCGCCTGCCTGCAACGGCTACGGCCGATTCTGATGACCACGCTGGCGGCGATCCTCGGC GCCTTGCCGCTGTTGCTCAGCCGCGCCGAAGGCGCAGAAATGCGCCAGCCACTGGGCCTGACCATCATCGGCGGCCTGATTTTCAGTCAGGTCCTGACCC TCTACACCACACCCGTGGTTTACCTCTATCTCGACAAGCTGCGCCACCGCTTCAACAAGTGGCGTGGCGTGCGTACTGACGCCGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>PMI25_003191
ATGACCGATCGTTCGCTTCTCAATCTGGCCACTGCGCGCGGCTCGCGTCTGGTGAGCCTGTCGCTGTGCGTGGCAATGCTCAGTGCCTGCGCCGTCGGCC CGGACTATCAGCGCCCGCAGACCGCCGAGGTCGCGCAATACAAGGAAGCCAAGGGCTGGCGTCAGGCCAATCCGAGCGACTCGCTGGCCCGTGGCGCCTG GTGGGAGTTGTATGGCGATCAGCAGCTCAACGGTCTGATCGAAAAACTCAACAGTTCCAACCAGACTGTCGCGCAATCCGAAGCCCAGTTCCGTCAGGCC CAGGCCCTGGTGCGCAGCGCCCGTGGGGCGTTTTACCCGAACGTGGACCTGAGCGTGGGCAAGACCCGTTCCAGCCAGGGCACCGGCAGCAGCAGTTCGA GCCTGAGCAGTTCGGCCAGCGGCATACGCGACACCTACAACGCGCAGTTGGGTGTGAGTTGGGAAGCCGACATCTGGGGCAAGTTGCGTCGCGGTCTGGA AGCCAACGAAGCCAGCGCCCAGGCGAGCTTCGCCGATCTGGCGGCGATGCGCCTGAGCCAGCAGTCGGAGCTGGTGCAGAATTACTTGCAACTGCGAGTG ATCGATCAGCAGAAACGCTTGCTCGAGGCCACCGTCGCGGCTTACGAAAAGTCGTTGCAGATGACCCAGAACCAGTATCGCGCCGGGATTTCCGGACGCG ATGCGGTGGCGCAGGCGCAGACCCAGCTGAAAACCACTCAGGCCGATCTGGTGGACCTGATCTGGCAACGTGCGCAGTTCGAAAACGCTATCGCCGTGCT CACCGGGCAGGCGCCGGCCGAGTTCAGCATCGCTGAAAGCCAGAACATTCCGAACCTGCCGCAGATTCCCCTGAGCCTGCCTTCGCAGTTGCTGGAGCGA CGTCCGGACATCGCCTCGGCGGAACGCTCGGTAATCGCCGCCAATGCCAATATCGGCGTAGCCAAAGCCGCGTATTACCCCGATCTGACATTGAGCATGA GCGGCGGTTACAGCAGCAGTACCTCGAAAAATCTTCTAACGCTGCCGAACCGTTTCTGGTCGGTGGGGCCGAAACTGGATCTGCCGATCTTCGATGGTGG CATCCGTTCGGCTGAGGTTGACCGGACCGAGGCGGTGTATGATCAGACCGTCGCCAATTACCGCCAGACCGTGCTCGACGGTTTCCGTGAAGTGGAAAAC TATCTGGTGCAACTGAAGGTGTATGAGGACGAGGCGGGTGTGCGTCAGGAAGCACTGGATGCCGCGCGCGACTCGCTGCGCCTGACTCAGAACCAGTACA AGGCCGGGTTGATTGCCTACATCGATGTGGTTGTGGTGCAGGCCACGGCGCTGAGCAACGAGCGCACTGTGCTCAACATCCTGCAGAATCGCCTGATTGC CAGCGTGCAATTGATCGCCGCGCTGGGCGGCGGCTGGGACGGACAACTGGCCACCGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGTGTAGGAGCTGCGGCACGCTGCGATCTTTTGATCTTAAAAAACAAGGTCAAAGGATCGCAGCGTACCGCAGCTCCTACAGGTTGTGATGGTTGTTC CAGAGCCTTGCGCAGTGATCAAACAAGCGTTTCATCGGGTTGATGGCAAAATGATTACTTTGTCAGTGCGTTCTTCCGCGCAATCAGTACAATCGCCGCA TTTGCCCGGCCGAGAATGGACGCAGTACGGCGCGGATGGTCGCGAGAATCTTCATGCTCATCGGTAATTATTCCTTCACCCTGGTTTTCATTTCTTTGTG TGTGGCGATCCTCGCGTCCTACACCGCGCTCGACCTGACCGGGCGCATCGCCAGCGCCCGTGGGCGAGCGGTGCATTTCTGGACGGCGGGCGGTGCACTG GCGATGGGGGTCGGCGTCTGGTCGATGCACTTCATCGGCATGCTCGCGTTCAAGCTGCCGATCGACCTGGGCTACGACATTGCGATTACCGCGCTGTCGC
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| Amino Acid Sequence |
>RND transporter
MTDRSLLNLATARGSRLVSLSLCVAMLSACAVGPDYQRPQTAEVAQYKEAKGWRQANPSDSLARGAWWELYGDQQLNGLIEKLNSSNQTVAQSEAQFRQA QALVRSARGAFYPNVDLSVGKTRSSQGTGSSSSSLSSSASGIRDTYNAQLGVSWEADIWGKLRRGLEANEASAQASFADLAAMRLSQQSELVQNYLQLRV IDQQKRLLEATVAAYEKSLQMTQNQYRAGISGRDAVAQAQTQLKTTQADLVDLIWQRAQFENAIAVLTGQAPAEFSIAESQNIPNLPQIPLSLPSQLLER RPDIASAERSVIAANANIGVAKAAYYPDLTLSMSGGYSSSTSKNLLTLPNRFWSVGPKLDLPIFDGGIRSAEVDRTEAVYDQTVANYRQTVLDGFREVEN YLVQLKVYEDEAGVRQEALDAARDSLRLTQNQYKAGLIAYIDVVVVQATALSNERTVLNILQNRLIASVQLIAALGGGWDGQLATE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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