Pseudomonas sp. HPB0071, HMPREF1487_08809
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTATCAGTCAAAAGCAGGATACTCCTTCACCCTAAAAGGTGCATGAACGCTGGGTTGTAGCCGCATCGTCTGATCACTACTACTTTTGTAGTACAAATA TAATTTTGCTACAAAAAAGCATTGACGACCCTTTTAAGGTCATGCAATCTGACCCTGCTTTCGCTAGAAAGAGGCCAAAAAGGCCTTCTGGCTGCGCTCC GGGTAACCCTCGGGCCATCCTTTGTAGTAACTGCCCATAAAGCACTACATAGAGTTGTAACTGTACGGAAACGGTTAGATGACCCCAGCGGTTCGGTCAG CATCAGGTGAACGACCTGATCCAGGGTATTCGTCTTTAGCGGTATCCCTGCAGGGTGTATCACTAGAGATGTCTTGTCTGCTGTTTCGCTTCCTTCAGTC GCACTCGACGTTGAGCCCAGTGCTGCGCTTATACGCGGCACGCAGGTCACGGTAGGAAAAACTGTTCGAAAGTCATTTTCAGCCGAGAAGGATTGACCCC
|
|
| DNA Sequence for Gene |
>HMPREF1487_08809
ATGTCCGTTTATCAAAATGAAATCAATGCCATCGCAGCCTTGAGAGAAACAGCAGGCAAGAGTTGGAACGCTATCAACCCCGAATATGCCGCCCGGATGC GGATACAAAACCGCTTCAGGACCGGACTGGATATTGCGCGCTATACCGCGGCCATCATGCGCAAAGACATGGCTGAGTACGATGCCGACTCCTCGGCATA TACCCAGTCCCTGGGCTGCTGGCACGGCTTTATCGGCCAACAGAAGCTTATCTCCATCAAGAAGCATTTGAAGACCACCAACAAGCGCTACCTGTACCTG TCAGGCTGGATGATTGCGGCGTTGCGCTCGGAGTTCGGCCCACTACCGGACCAGTCCATGCACGAGAAGACGGCTGTTCCGGCTTTGATCGAGGAGCTGT ATACCTTTTTGCGTCAGGCAGATGCACGCGAGCTGGGTGGCCTGTTCCGTGAGCTGGATGCTGCCCGTGCAGCCGATGAAAACGCCAAGGCTGCAGCAAT CCAGCAACAGATCGACAGCTATGAAACCCATATCGTACCGATCATTGCCGATATCGATGCGGGCTTTGGTAATGCGGAAGCCACCTATTTGCTGGCCAAA AAGATGATCGAGGCCGGAGCCTGCTGTATCCAGCTGGAAAACCAGGTCTCGGATGAAAAGCAGTGCGGTCACCAGGATGGAAAGGTCACGGTACCCCACG AAGATTTTCTGGCCAAGATCAATGCGGTTCGCTACGCATTCCTCGAGTTGGGAGTAGATGACGGCGTTATCGTCGCTCGCACAGACTCCCTGGGCGCCGG GCTGACCAAGCAGATTGCCGTCAGTAAGCAACCGGGCGACCTGGGCGATCAATACAACAGTTTTCTCGATTGTGAAGAGATCAGCCCTGCCGAACTGAAG AACGGAGACGTCATTCTCAACCGTGATGGAAAGCTGCTGCGTCCCAAACGTCTGGCAAGCGGCCTGTTCCAGTTCCGTCAGGGCAGCGGGCAGGATCGCG TTGTACTGGACTGCATCACATCGCTGCAAAATGGGGCAGACCTGCTATGGATTGAAACGGAAAAGCCCCACGTTGGCCAGATCAAAAGCATGGTTGACCG CATCCGCGAGGTCGTTCCAAATGCCAAGCTGGTCTACAACAACAGTCCTTCCTTCAACTGGACGCTGAACTTCAGACAGCAGGTCTTTGACAGTCTGCAA GCTGAAGGCAAGGACGTATCGGCTTATGACCGTACCAAGTTGATGAGCGCAGAGTACGACGAGACCGAACTGGCCCGTATCGCCGATGAGAAAATTCGGA CCTTCCAGCGGGACGGCTCCCGGGAAGCAGGGATATTCCATCACCTCATTACCTTGCCAACCTACCACACGGCGGCGCTGTCGACGGATAACCTGGCGAA GGGTTACTTCGCTGATGAAGGCATGCTGGCCTATGTAAAAGGCGTTCAGCGCCAGGAGATTCGCCAGGGAATCGCCTGTGTGAAGCACCAGAACATGGCC GGCTCCGATATCGGGGACGATCACAAGGAATATTTCGCAGGCGAGGCAGCCCTCAAGGCGAGCGGCAAGGACAACACCATGAACCAGTTCCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGAGTAACGTTATTCCGGCCCACCCGGGCCGGTTTTACCGTAAGTGACTTGTTTACCGTTTCCTTCCGAGTGCCACCGGAAGCTGTCTCACGAGGAGCCC AATCATGGATCTCAACAACCCAACCCTTGATGACTTGAAACAACTTTATGCCTCCTGCAAGGACAAAAATGATCACCACATCCTGTGGATTTGCTCATCC GGCAAGGTGCATATCGACCGGCTTCCGGCAAACGTCGACCCGGAAGCCTTCGAGAAGGAAAAACCGAACATGAAGGTTCGCTTCAAGACCTATCATCGTG GTAAAGGCTATGTTGGCAAGACCGCTGCAGCTGACGAGACGTTCATGTCACGTATGTACCGCACGCTTCTCGAACAATGGTCGAAGGCTCAAAGCAGCCC GCGTGTTCAATACATAGAAAAATACTTCTAAGACTATTCGGGCAGCCCTTGCGGCTGCTCTTCTGACATAAAAAAACCAGGGCATGCCCTGGTTTTTTTA
|
|
| Amino Acid Sequence |
>isocitrate lyase
MSVYQNEINAIAALRETAGKSWNAINPEYAARMRIQNRFRTGLDIARYTAAIMRKDMAEYDADSSAYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMIAALRSEFGPLPDQSMHEKTAVPALIEELYTFLRQADARELGGLFRELDAARAADENAKAAAIQQQIDSYETHIVPIIADIDAGFGNAEATYLLAK KMIEAGACCIQLENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVSKQPGDLGDQYNSFLDCEEISPAELK NGDVILNRDGKLLRPKRLASGLFQFRQGSGQDRVVLDCITSLQNGADLLWIETEKPHVGQIKSMVDRIREVVPNAKLVYNNSPSFNWTLNFRQQVFDSLQ AEGKDVSAYDRTKLMSAEYDETELARIADEKIRTFQRDGSREAGIFHHLITLPTYHTAALSTDNLAKGYFADEGMLAYVKGVQRQEIRQGIACVKHQNMA GSDIGDDHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|