Pseudomonas sp. HPB0071, HMPREF1487_07508

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00052 duf2_2 IPR001633 EAL domain 589 831 9.8E-118
CDD cd00130 PAS IPR000014 PAS domain 307 407 3.37032E-9
Pfam PF05228 CHASE4 domain IPR007892 CHASE4 52 211 7.2E-15
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 589 836 3.1E-99
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 414 580 9.2E-41
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 285 406 6.7E-19
Pfam PF00563 EAL domain IPR001633 EAL domain 595 825 1.2E-72
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 420 574 6.2E-48
Gene3D G3DSA:3.30.450.20 PAS domain - - 285 413 3.7E-18
SMART SM00091 pas_2 IPR000014 PAS domain 298 363 3.6E-6
Pfam PF00989 PAS fold IPR013767 PAS fold 299 405 2.6E-8
CDD cd01948 EAL IPR001633 EAL domain 595 831 1.67182E-118
Coils Coil Coil - - 583 603 -
CDD cd01949 GGDEF IPR000160 GGDEF domain 420 577 3.62443E-60
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 296 411 1.7E-12
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 594 833 2.88E-90
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 419 588 8.4E-57
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 590 836 1.3E-88
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 424 581 5.1E-47
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 417 577 1.2E-42
SMART SM00267 duf1_3 IPR000160 GGDEF domain 408 579 8.1E-65
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 272 830 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.