Pseudomonas sp. HPB0071, HMPREF1487_07466

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 308 320 9.9E-53
Gene3D G3DSA:2.40.10.120 - - - 27 261 1.1E-84
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 378 471 1.5E-19
Pfam PF13365 Trypsin-like peptidase domain - - 96 229 1.5E-33
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 381 462 2.1E-99
MobiDBLite mobidb-lite consensus disorder prediction - - 360 381 -
SMART SM00228 pdz_new IPR001478 PDZ domain 268 350 6.0E-14
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 382 469 1.84E-16
Pfam PF13180 PDZ domain IPR001478 PDZ domain 270 359 3.3E-17
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 105 117 9.9E-53
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 126 146 9.9E-53
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 200 217 9.9E-53
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 237 363 3.78E-22
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 237 385 2.6E-10
SMART SM00228 pdz_new IPR001478 PDZ domain 381 460 3.6E-11
Pfam PF13180 PDZ domain IPR001478 PDZ domain 383 462 2.1E-11
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 3 278 4.46E-70
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 28 261 1.8E-101
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 222 239 9.9E-53
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 405 463 1.1E-7
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 28 467 0.0
CDD cd00987 PDZ_serine_protease - - 382 467 1.25913E-18
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 166 190 9.9E-53
CDD cd00987 PDZ_serine_protease - - 268 357 1.3962E-23
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 263 369 8.7E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.