Pseudomonas sp. HPB0071, HMPREF1487_07079
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.3720.10 | - | IPR035906 | MetI-like superfamily | 87 | 325 | 9.4E-25 |
| CDD | cd06261 | TM_PBP2 | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 96 | 316 | 2.03118E-23 |
| PANTHER | PTHR43163 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED | - | - | 1 | 335 | 9.8E-130 |
| SUPERFAMILY | SSF161098 | MetI-like | IPR035906 | MetI-like superfamily | 90 | 319 | 7.59E-23 |
| Pfam | PF19300 | Binding-prot-dependent transport system membrane comp, N-term | IPR045621 | ABC transporter type 1, GsiC-like, N-terminal domain | 1 | 103 | 4.3E-11 |
| Pfam | PF00528 | Binding-protein-dependent transport system inner membrane component | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 114 | 333 | 5.6E-48 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.