Pseudomonas sp. HPB0071, HMPREF1487_06160
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCGGCCATACGGATGTGGTCGAGATCCAGGATGCATACCACCTGCTCGATCCGCTGGTTGGCGGTGCGCTCGCCAGCATTCTGTTTGGTGTGGCGCTG CTGGCTTCGGGACAAAGCTCGACCTTTACCGGGACGGTAGCCGGACAGGTCATTCTGGAAGGGTATCTGCAACTCAAGATTCCCTGCTGGCAGCAGCGAT TGGCCACACGCGCCATGGCCCTGGTCCCGGCGCTGATTGGCGTGTGGTGGTTGGGCGAGGGTTCCGTGGGCAAGCTATTGGTGCTGAGTCAGGTTGTCCT GAGTCTGCAGCTTCCCTTTGCGCTCTACCCGCTCATTCGCATGACGAGCGATACGAAACTCATGGGCCCTTTTGCTAATCGCACCTATACCAAGCTGCTG GCCTGGTTTCTGTTCGGTATCATCAGTCTCGCCAACCTGTGGCTTCTGGTGCAGTGGTTATTCTGATGACAGACGGAAAAGCAGTAAGTAGGAGAGCCTG
|
|
| DNA Sequence for Gene |
>HMPREF1487_06160
ATGGGTATCAATCAGAGACGCCACCCCCGTGTAGCCATGAAGTGCCGGTTGCGCATTACGCACCCGGACTTTGGCGAGCTGATCTGCCAGACGCGTGACC TTTCCGACGGTGGCGTCTATGTGCAGCACGAGACGCTGACGGAGTGGCCTGTGGGGACGCGGGTACAGGGACAGGTGCTGGACCTGCCCATCGAGGCACC TGTTGTCGACATGGAGTTGATGCGTGTGGATGCGCTCGGTGCAGGCTTTCGCTTTCTACGAGGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCAGGCGTTGGCTTAGCCCTTCTTCTTGTCCAGACGCTTCAGGAAAACCGTCATTTCCTTTTCCGACTGCTTATCGCCCTTGGTCTGCGCAGCAGTCAG GCCTGACTGCCAGGCCGCGCGGGCACCTTCACTGTCTCCCTGCTGTTCCAAGGCCTTGCCGAGCAGCTTCCAGGCGGCCGAATAAGTGGCATCCTGCTCT ACGCAGCGTTGAAGGTGTATAGCGGCCTGCGCGGCATTTCCGGCATCCAGATAGCCCTTGCCCAGCCCGAAACGCAACATGGGGTTATCCATGCCTTTGG CCAACATCTTTTCCAATGATTCGAGCATGGGCATTTCCTCTTATTTGGCGATCTTGATCAGCTTGGCGTAGTAGAACCCGTCGTGGCCATTTTCCTGAGG AAGTAGCTGCCGCCCGTGGGGCTGTTTGATTCCCCAGGGGGCTGGAATATCCAGCTCTCGAGCACCCGGTGTTCGGGCTAGAAACGCGCCGATGTTGGCG
|
|
| Amino Acid Sequence |
>hypothetical protein
MGINQRRHPRVAMKCRLRITHPDFGELICQTRDLSDGGVYVQHETLTEWPVGTRVQGQVLDLPIEAPVVDMELMRVDALGAGFRFLRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|