Pseudomonas sp. HPB0071, HMPREF1487_06075

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_06075
NCBI Locus Tag	HMPREF1487_RS08755
Name
Replicon	scaffold_1
Genomic location	1849899 - 1850405 (+ strand)

Cross-References

RefSeq	WP_010796271.1
GI	498495538
INSDC	ENA34415.1
NCBI Locus Tag	HMPREF1487_RS08755
NCBI Old Locus Tag	HMPREF1487_06075
UniParc	UPI0002C8C2F7
UniProtKB Acc	N2JAS5
UniProtKB ID	N2JAS5_9PSED
UniRef100	UniRef100_N2JAS5
UniRef50	UniRef50_Q9KN58
UniRef90	UniRef90_N2JAS5

Product

Feature Type	CDS
Coding Frame	1
Product Name	type VI secretion protein
Synonyms
Evidence for Translation
Charge (pH 7)	-7.99
Kyte-Doolittle Hydrophobicity Value	-0.493
Molecular Weight (kDa)	18.5
Isoelectric Point (pI)	4.47

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000082 (1224 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_06075 Search term: type VI secretion protein

Human Homologs

References