Pseudomonas sp. HPB0071, HMPREF1487_05989

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 179 269 3.84527E-10
Pfam PF08447 PAS fold IPR013655 PAS fold-3 180 262 1.3E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 31 147 1.66E-10
CDD cd01949 GGDEF IPR000160 GGDEF domain 284 439 1.3179E-67
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 133 443 7.7E-85
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 153 278 3.7E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 152 269 5.3E-23
SMART SM00267 duf1_3 IPR000160 GGDEF domain 272 442 9.4E-66
Gene3D G3DSA:3.30.450.20 PAS domain - - 16 151 5.9E-15
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 283 436 1.8E-47
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 278 442 1.0E-44
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 288 443 4.79E-50
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 23 152 4.4E-6
Pfam PF08448 PAS fold IPR013656 PAS fold-4 33 146 5.9E-8
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 276 443 1.0E-58
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 142 270 9.77E-27
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 279 441 7.2E-45
SMART SM00091 pas_2 IPR000014 PAS domain 26 94 0.043
SMART SM00091 pas_2 IPR000014 PAS domain 157 223 4.7E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.