Pseudomonas sp. P179, HMPREF1224_10751
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. P179 genomic scaffold acBRO-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTTTGCGCAGTAGTGTTCAGGCCAGTATTTTCAAGGGCTGTGGACTTTTATTGGGGATGTTTCTTGGTTTTCATTGTGCAACTTCTTGCACAATCGCTA TTACGCTCTAAATCAGCTGTTGGTCCGCTTGGAAGGCCTATGTTTCGAGGCTCTCCGGAGAAATCCATACTGCCTGCCTTATTTTTTATAAATTGTTAAC TACCTGTTTTGGTAGGGTTTTCCAAATGGCCATCAATGTCGTTATGATGGCTATAGCCAAGCCGTAAAGGGCATGGACGCAGACGCCTGACGTTTGGCTG AAAATCTTTCATTGATTCGTATCAATGAATAGGAAAATTCCCAAAGAGGGAATGTCCTGTTGCTTGCCAGTTTTTATGTTGTTTTCATGGAAAAGGCAAA GAGCTCTTCAGACTATTGGGATTTTCGTTCGGTTTTTATGCCAACTAGTTGAATTGTTAAGATATTCATTGGCGCACATGGTGTGCATTGAAGGGTTAGG
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| DNA Sequence for Gene |
>HMPREF1224_10751
ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTTGCGGGTGAGGATGTGCGTTTTTCCAGCG AATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTCCATGAGAACGGCCAGACCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCT TCGTGCCCAATCCAAGGACCTGCGTGTTGCAGCCTGGTTGACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGACTGGGATTGCTG GAACGTCTGTGCAGCCGGCATTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCCGCGGCCATTGCCTGGCTGGTGCCCCGGTTGGAGCAGGCGC TGAACGAAAACGTACCGATCAAGGAGCAACTCCCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCGCTGACCGCGCAACTGGGCGA CGACGCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGCCGACAACCAGCCCGAACCTGGAGTGGTCGGCGCCGTGGTG GCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGGGTGCGCCCATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCG CACGCCCCCTGTGCGCCTGGTGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGAACGATGCTCTGGCTGCCCATCGAGTCCATGCC CGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTACCAGGAGCGTTTCGCCCAGGGCCTGTACGCCGATCTC CTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCGTTCTGGTTCGACGGCCAGCGCCTGGTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGA TGCGGGAAGTCGAAATGCATTTCGCCTTGCTCCTGCAGCGTCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGATGGCAGCGCATTCGCCGATGCGGCCAC CCGCGGCTGGATCAGCGCCCATGTCATGCCCCATCTCCAGAACGACAGTGCGCCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCC CTGGACGAGGTCCAGCCGGTGTTGCGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGCCCACGGCGGACGCGCCCGGT TCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCAAGACCCAGCTGGAGAGCCTCGACCATCAGTTGCACGAATC GGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTACTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGC AAGGAAGACATTTATCGCAGGCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTCGCGCCCTCAATTCTCAAGGAGAAAAAGCCATGGCCAAAGAAGGCTCGGTAGCCCCAAAGGAACGCATCAACGTCACCTTCAAGCCCGCCACCGG CGGTGCCCAGGAGGAAATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCGGGGATGAGCGCAAGGTGGAGGACCGCAAGCCGATC GGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGGCTGACGCTGAGCGTACCCAATCGTCTCCAGGAGGAGGGCGGCAGCGACG AGCTGGCGGTGGGGCTGCAGATCAACTCGATGAAGGACTTCAACCCGGCCAGCATCGTCGAGCAGGTGCCCGAGCTGAAGAAGCTGATGGAGTTGCGCGA TGCGTTGGTGGCCCTCAAGGGCCCGCTGGGCAACGCCCCGGCGTTCCGCAAGGCCATCGAAAGCGTACTCGCCGACGACGAGTCCCGTAGCCGTGTGCTG
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLRAQSKDLRVAAWLTWALYQRESFPGLLAGLGLL ERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTALTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVV AQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAWWLKQKATDLRALRLNRTMLWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADL LVELEASLARAPFWFDGQRLVWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISAHVMPHLQNDSAPRKVETVALQAEWDVA LDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDVLHLLHSCCELLPQNHAVRER KEDIYRRLCHLDLEVVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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